Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 33166779 . C A CCDS6535.1:NM_001497.3:c.389tGc>tTc_NP_001488.2:p.130C>F Homo sapiens beta-1,4-galactosyltransferase 1 (B4GALT1), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
6fwt 1 P15291 100.0 0.0 X-RAY
 2018-10-10 CYS A:9 A:130 11.0 0.081 -70.7 149.3 11.0 0.081 0.0 HOH
 2.842
 HB2
 O
6fwu 1 P15291 100.0 0.0 X-RAY
 2018-10-10 CYS A:5 A:130 14.0 0.104 -67.5 147.4 14.0 0.104 0.0
CYS B:5 B:130 14.0 0.104 -65.9 149.5 14.0 0.104 0.0 HOH
 5.769
 HB3
 O
4l41 2 P15291 99.27 0.0 X-RAY
 2013-10-02 CYS B:19 C:130 17.0 0.126 -62.4 140.3 17.0 0.126 0.0
2ae7 1 P15291 98.9 0.0 X-RAY
 2005-10-04 CYS A:19 A:130 13.0 0.096 -67.9 157.8 13.0 0.096 0.0 SO4
HOH
 8.193
3.582
 SG
CB
 O4
O
CYS B:19 B:130 12.0 0.089 -71.9 158.9 NA NA NA
CYS C:19 C:130 10.0 0.074 -73.1 153.5 NA NA NA
2aec 1 P15291 98.9 0.0 X-RAY
 2005-10-04 CYS A:19 A:130 13.0 0.096 -68.0 156.7 13.0 0.096 0.0 SO4
HOH
 8.216
3.570
 SG
CB
 O4
O
CYS B:19 B:130 12.0 0.089 -66.9 155.4 NA NA NA
CYS C:19 C:130 12.0 0.089 -68.9 157.3 NA NA NA
2aes 1 P15291 98.9 0.0 X-RAY
 2005-10-04 CYS A:19 A:130 12.0 0.089 -65.2 160.2 12.0 0.089 0.0 SO4
HOH
 8.107
3.576
 SG
CB
 O4
O
CYS B:19 B:130 12.0 0.089 -66.5 156.1 NA NA NA
CYS C:19 C:130 12.0 0.089 -67.9 158.0 NA NA NA
2agd 1 P15291 98.9 0.0 X-RAY
 2005-10-04 CYS A:19 A:130 14.0 0.104 -69.5 160.7 14.0 0.104 0.0 SO4
HOH
 8.188
3.540
 SG
CB
 O4
O
CYS B:19 B:130 13.0 0.096 -68.5 158.0 NA NA NA
CYS C:19 C:130 13.0 0.096 -71.3 159.7 NA NA NA
2ah9 1 P15291 98.9 0.0 X-RAY
 2005-10-04 CYS A:19 A:130 13.0 0.096 -66.9 159.6 13.0 0.096 0.0 SO4
HOH
 8.214
3.497
 SG
CB
 O4
O
CYS B:19 B:130 14.0 0.104 -66.5 160.2 NA NA NA
CYS C:19 C:130 13.0 0.096 -71.4 157.0 NA NA NA
2fy7 1 P15291 98.9 0.0 X-RAY
 2006-03-14 CYS A:19 A:130 13.0 0.096 -71.0 149.3 13.0 0.096 0.0 PGE
PGE
HOH
 9.476
9.783
2.748
 O
SG
O
 C3
C3
O
2fya 1 P15291 98.9 0.0 X-RAY
 2006-03-14 CYS A:19 A:130 14.0 0.104 -70.0 152.7 14.0 0.104 0.0 PGE
HOH
 9.341
2.680
 O
O
 C3
O
2fyb 1 P15291 98.9 0.0 X-RAY
 2006-03-14 CYS A:19 A:130 14.0 0.104 -70.4 152.9 14.0 0.104 0.0 HOH
 2.585
 O
 O
3ee5 1 P15291 98.9 0.0 X-RAY
 2009-01-06 CYS A:19 A:130 12.0 0.089 -63.4 157.1 12.0 0.089 0.0 SO4
HOH
 8.313
3.489
 SG
CB
 O3
O
CYS B:19 B:130 14.0 0.104 -71.4 158.0 NA NA NA
CYS C:19 C:130 12.0 0.089 -69.8 157.3 NA NA NA
4ee3 1 P15291 98.9 0.0 X-RAY
 2012-07-04 CYS A:19 A:130 12.0 0.089 -59.9 153.9 12.0 0.089 0.0 SO4
HOH
 8.136
2.862
 SG
O
 O4
O
CYS B:19 B:130 15.0 0.111 -62.9 157.2 NA NA NA
CYS C:19 C:130 13.0 0.096 -59.6 155.0 NA NA NA
4ee4 1 P15291 98.9 0.0 X-RAY
 2012-07-04 CYS A:19 A:130 14.0 0.104 -63.0 155.3 14.0 0.104 0.0 SO4
HOH
 8.026
2.806
 SG
O
 O4
O
CYS B:19 B:130 13.0 0.096 -63.6 159.1 NA NA NA
CYS C:19 C:130 13.0 0.096 -66.8 159.1 NA NA NA
4ee5 1 P15291 98.9 0.0 X-RAY
 2012-07-04 CYS A:19 A:130 12.0 0.089 -60.5 153.1 12.0 0.089 0.0 SO4
HOH
 8.074
2.694
 SG
O
 O4
O
CYS B:19 B:130 14.0 0.104 -62.5 155.8 NA NA NA
CYS C:19 C:130 13.0 0.096 -64.8 154.1 NA NA NA
4eea 1 P15291 98.9 0.0 X-RAY
 2012-07-04 CYS A:19 A:130 13.0 0.096 -64.4 153.6 13.0 0.096 0.0 SO4
HOH
 8.082
2.639
 SG
O
 O2
O
CYS B:19 B:130 13.0 0.096 -61.2 154.5 NA NA NA
CYS C:19 C:130 14.0 0.104 -64.4 157.4 NA NA NA
4eeg 1 P15291 98.9 0.0 X-RAY
 2012-07-04 CYS A:19 A:130 11.0 0.081 -57.0 150.7 11.0 0.081 0.0 SO4
HOH
 8.033
3.515
 SG
CB
 O2
O
CYS B:19 B:130 12.0 0.089 -61.1 157.0 NA NA NA
CYS C:19 C:130 11.0 0.081 -63.1 151.9 NA NA NA
4eem 1 P15291 98.9 0.0 X-RAY
 2012-07-04 CYS A:19 A:130 13.0 0.096 -59.7 153.6 13.0 0.096 0.0 SO4
HOH
 8.081
2.985
 SG
O
 O4
O
CYS B:19 B:130 13.0 0.096 -60.4 153.9 NA NA NA
CYS C:19 C:130 12.0 0.089 -59.1 155.9 NA NA NA
4eeo 1 P15291 98.9 0.0 X-RAY
 2012-07-04 CYS A:19 A:130 11.0 0.081 -51.4 149.3 11.0 0.081 0.0 SO4
HOH
 7.678
3.405
 SG
CB
 O4
O
CYS B:19 B:130 14.0 0.104 -64.1 159.5 NA NA NA
CYS C:19 C:130 11.0 0.081 -64.2 151.9 NA NA NA
1fr8 1 P08037 89.24 0.0 X-RAY
 2000-09-20 CYS A:20 A:134 30.0 0.222 -71.3 143.5 30.0 0.222 0.0 HOH
 4.981
 SG
 O
CYS B:20 B:134 34.0 0.252 -60.0 161.3 34.0 0.252 0.0 HOH
 6.583
 SG
 O
1fgx 1 P08037 88.89 0.0 X-RAY
 2000-08-16 CYS A:20 A:134 17.0 0.126 -74.6 141.7 17.0 0.126 0.0
CYS B:20 B:134 22.0 0.163 -53.6 161.8 NA NA NA
1nf5 2 P08037 90.48 0.0 X-RAY
 2002-12-25 CYS B:18 B:134 17.0 0.126 -68.7 146.9 17.0 0.126 0.0 HOH
 3.581
 CB
 O
CYS D:18 D:134 16.0 0.119 -58.6 153.9 NA NA NA
1nhe 2 P08037 90.48 0.0 X-RAY
 2003-01-07 CYS B:18 B:134 14.0 0.104 -65.5 154.3 14.0 0.104 0.0 HOH
 3.208
 O
 O
CYS D:18 D:134 17.0 0.126 -69.2 144.7 NA NA NA
1nkh 2 P08037 90.48 0.0 X-RAY
 2003-01-14 CYS B:18 B:134 15.0 0.111 -58.3 152.9 15.0 0.111 0.0 HOH
 4.016
 CB
 O
CYS D:18 D:134 18.0 0.133 -54.8 153.3 NA NA NA
1nqi 2 P08037 90.48 0.0 X-RAY
 2003-02-04 CYS B:18 B:134 17.0 0.126 -69.9 146.4 17.0 0.126 0.0 HOH
 2.576
 O
 O
CYS D:18 D:134 15.0 0.111 -80.7 148.3 NA NA NA
1nwg 2 P08037 90.48 0.0 X-RAY
 2003-02-18 CYS B:18 B:134 17.0 0.126 -63.6 142.8 17.0 0.126 0.0 HOH
 3.341
 CB
 O
CYS D:18 D:134 19.0 0.141 -84.1 158.8 NA NA NA
1o23 2 P08037 90.48 0.0 X-RAY
 2003-02-25 CYS B:18 B:134 15.0 0.111 -74.1 146.9 15.0 0.111 0.0 HOH
 4.949
 N
 O
CYS D:18 D:536 19.0 0.141 -70.0 155.1 NA NA NA
1oqm 2 P08037 90.48 0.0 X-RAY
 2003-03-18 CYS B:18 B:134 17.0 0.126 -66.1 148.2 17.0 0.126 0.0 HOH
 3.427
 CB
 O
CYS D:18 D:134 16.0 0.119 -58.0 156.6 NA NA NA
1nmm 2 P08037 90.11 0.0 X-RAY
 2003-01-21 CYS B:18 B:134 16.0 0.119 -69.2 146.9 16.0 0.119 0.0 HOH
 3.121
 O
 O
CYS D:18 D:134 16.0 0.119 -63.0 154.8 NA NA NA
1o0r 1 P08037 90.11 0.0 X-RAY
 2003-03-04 CYS A:18 A:134 21.0 0.156 -68.9 144.6 21.0 0.156 0.0 HOH
 3.348
 CB
 O
CYS B:18 B:134 9.0 0.067 -54.7 154.9 NA NA NA
1yro 2 P08037 89.74 0.0 X-RAY
 2005-03-22 CYS B:18 B:134 18.0 0.133 -63.0 153.1 18.0 0.133 0.0 HOH
 2.719
 O
 O
CYS D:18 D:134 15.0 0.111 -68.0 155.5 NA NA NA
1tvy 1 P08037 89.74 0.0 X-RAY
 2004-12-14 CYS A:18 A:134 18.0 0.133 -55.7 153.3 18.0 0.133 0.0 HOH
 3.843
 CB
 O
CYS B:18 B:134 21.0 0.156 -67.2 146.5 NA NA NA
1tw1 1 P08037 89.74 0.0 X-RAY
 2004-12-14 CYS A:18 A:134 21.0 0.156 -56.9 158.6 21.0 0.156 0.0 DIO
HOH
 4.591
3.531
 O
CB
 C2'
O
CYS B:18 B:134 19.0 0.141 -75.5 148.3 NA NA NA
1tw5 1 P08037 89.74 0.0 X-RAY
 2004-12-14 CYS A:18 A:134 18.0 0.133 -56.9 149.7 18.0 0.133 0.0 DIO
HOH
 3.932
3.959
 O
CB
 C2
O
CYS B:18 B:134 20.0 0.148 -65.2 146.7 NA NA NA
2fyc 2 P08037 89.74 0.0 X-RAY
 2006-03-14 CYS B:18 B:134 19.0 0.141 -63.2 152.0 19.0 0.141 0.0 HOH
 2.846
 O
 O
CYS D:18 D:134 13.0 0.096 -63.9 155.3 NA NA NA
4krv 1 P08037 89.74 0.0 X-RAY
 2013-08-28 CYS A:18 A:134 21.0 0.156 -63.2 140.6 21.0 0.156 0.0 SO4
HOH
 5.595
3.667
 SG
CB
 O1
O
CYS B:18 B:134 19.0 0.141 -80.5 148.9 NA NA NA
1pzt 1 P08037 89.74 0.0 X-RAY
 2003-09-16 CYS A:18 A:134 18.0 0.133 -64.1 145.1 18.0 0.133 0.0 HOH
 2.554
 O
 O
1pzy 2 P08037 89.74 0.0 X-RAY
 2003-09-02 CYS B:18 B:134 18.0 0.133 -53.9 141.5 18.0 0.133 0.0 HOH
 3.889
 CB
 O
CYS D:18 D:134 21.0 0.156 -63.5 145.5 NA NA NA
2fyd 2 21450879 89.38 0.0 X-RAY
 2006-03-14 CYS B:18 B:134 19.0 0.141 -58.9 149.2 19.0 0.141 0.0 HOH
 3.594
 CB
 O
CYS D:18 D:134 18.0 0.133 -65.3 157.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p15291-f1 1 P15291 100.0 0.0 CYS A:130 A:130 11.0 0.081 -63.5 147.7