Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 79117758 . T A CCDS6653.1:NM_001097633.1:c.461gTg>gAg_NP_001091102.1:p.154V>E Homo sapiens glucosaminyl (N-acetyl) transferase 1, core 2 (GCNT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2gak 1 Q09324 84.65 0.0 X-RAY
 2006-07-11 VAL A:117 A:154 1.0 0.006 E -95.6 127.8 1.0 0.006 0.0 HOH
 3.500
 O
 O
VAL B:117 B:154 1.0 0.006 E -97.8 121.6 1.0 0.006 0.0 HOH
 3.171
 O
 O
2gam 1 Q09324 84.65 0.0 X-RAY
 2006-07-11 VAL A:117 A:154 0.0 0.0 E -100.5 130.7 0.0 0.0 0.0 HOH
 3.857
 C
 O
VAL B:117 B:154 2.0 0.013 E -101.7 126.1 2.0 0.013 0.0 HOH
 4.048
 C
 O
VAL C:117 C:154 1.0 0.006 E -90.9 126.8 NA NA NA
VAL D:117 D:154 0.0 0.0 E -94.9 130.0 NA NA NA
3otk 1 Q09324 84.4 0.0 X-RAY
 2011-09-14 VAL A:117 A:154 1.0 0.006 E -98.6 130.1 1.0 0.006 0.0 UDP
HOH
 6.092
4.044
 C
C
 O2
O
VAL B:117 B:154 1.0 0.006 E -92.6 127.3 NA NA NA
VAL C:117 C:154 1.0 0.006 E -99.0 133.0 NA NA NA
VAL D:117 D:154 1.0 0.006 E -101.5 123.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02742-f1 1 Q02742 100.0 0.0 VAL A:154 A:154 2.0 0.013 E -96.3 124.1