Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 79118400 . C A CCDS6653.1:NM_001097633.1:c.1103cCc>cAc_NP_001091102.1:p.368P>H Homo sapiens glucosaminyl (N-acetyl) transferase 1, core 2 (GCNT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2gak 1 Q09324 84.65 0.0 X-RAY
 2006-07-11 PRO A:331 A:368 51.0 0.352 S -70.5 -14.6 3.0 0.021 0.331 B:Q09324:0.331
 HOH
 3.690
 CD
 O
PRO B:331 B:368 51.0 0.352 S -69.3 -25.0 5.0 0.034 0.318 A:Q09324:0.317
 HOH
 3.003
 CG
 O
2gam 1 Q09324 84.65 0.0 X-RAY
 2006-07-11 PRO A:331 A:368 55.0 0.379 S -55.9 -33.8 4.0 0.028 0.351 B:Q09324:0.352
 GAL
HOH
 7.775
4.345
 CG
CD
 O3
O
PRO B:331 B:368 52.0 0.359 S -63.2 -40.0 2.0 0.014 0.345 A:Q09324:0.345
 GAL
HOH
 7.782
3.505
 CG
CG
 O3
O
PRO C:331 C:368 53.0 0.366 S -59.1 -29.8 NA NA NA
PRO D:331 D:368 53.0 0.366 S -77.3 -13.3 NA NA NA
3otk 1 Q09324 84.4 0.0 X-RAY
 2011-09-14 PRO A:331 A:368 50.0 0.345 S -71.1 -14.0 50.0 0.345 0.0 HOH
 3.778
 CD
 O
PRO B:331 B:368 48.0 0.331 S -76.6 -16.1 NA NA NA
PRO C:331 C:368 50.0 0.345 S -71.8 -16.2 NA NA NA
PRO D:331 D:368 48.0 0.331 S -75.9 -13.8 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02742-f1 1 Q02742 100.0 0.0 PRO A:368 A:368 58.0 0.4 S -62.5 -24.3