Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 79118507 . G A CCDS6653.1:NM_001097633.1:c.1210Gtg>Atg_NP_001091102.1:p.404V>M Homo sapiens glucosaminyl (N-acetyl) transferase 1, core 2 (GCNT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2gak 1 Q09324 84.65 0.0 X-RAY
 2006-07-11 MET A:367 A:404 4.0 0.022 T -71.8 -0.7 4.0 0.022 0.0 HOH
 4.027
 CE
 O
MET B:367 B:404 11.0 0.059 T -56.3 -25.5 11.0 0.059 0.0 HOH
 3.004
 CE
 O
2gam 1 Q09324 84.65 0.0 X-RAY
 2006-07-11 MET A:367 A:404 27.0 0.146 T -52.6 -38.8 27.0 0.146 0.0 HOH
 4.987
 N
 O
MET B:367 B:404 4.0 0.022 T -53.9 -29.1 4.0 0.022 0.0 HOH
 3.789
 CG
 O
MET C:367 C:404 6.0 0.032 T -78.2 -20.8 NA NA NA
MET D:367 D:404 62.0 0.335 T -59.1 -22.7 NA NA NA
3otk 1 Q09324 84.4 0.0 X-RAY
 2011-09-14 MET A:367 A:404 9.0 0.049 T -55.6 -26.6 9.0 0.049 0.0 HOH
 3.638
 CE
 O
MET B:367 B:404 23.0 0.124 T -63.3 -35.5 NA NA NA
MET C:367 C:404 14.0 0.076 T -53.7 -32.9 NA NA NA
MET D:367 D:404 42.0 0.227 T -54.5 -36.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q02742-f1 1 Q02742 100.0 0.0 VAL A:404 A:404 7.0 0.045 T -59.1 -24.5