Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8518319 . G A CCDS6472.2:NM_130391.3:c.1072Cat>Tat_NP_569075.2:p.358H>Y Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 HIS A:338 A:365 26.0 0.133 E -147.3 146.1 26.0 0.133 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 HIS B:338 A:365 33.0 0.169 E -150.2 145.5 33.0 0.169 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 HIS A:328 B:355 36.0 0.185 E -146.4 144.4 36.0 0.185 0.0
HIS B:328 A:355 35.0 0.179 E -147.5 143.3 35.0 0.179 0.0
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 HIS A:338 A:365 31.0 0.159 E -143.2 141.7 31.0 0.159 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 HIS A:344 A:365 26.0 0.133 E -148.0 141.5 26.0 0.133 0.0
HIS C:344 C:365 38.0 0.195 E -149.0 141.4 38.0 0.195 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 HIS A:328 A:355 39.0 0.2 E -112.7 143.1 39.0 0.2 0.0
4yfe 1 Q64487 98.43 9e-123 X-RAY
 2015-05-06 HIS A:39 A:365 34.0 0.174 E -145.6 145.4 34.0 0.174 0.0 HOH
 2.898
 ND1
 O
HIS B:39 B:365 31.0 0.159 E -145.7 145.6 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 HIS A:358 A:358 27.0 0.138 E -137.6 148.2