Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr9 | 8521330 | . | A | C | CCDS6472.2:NM_130391.3:c.908gTt>gGt_NP_569075.2:p.303V>G | Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA. |
|---|---|---|---|---|---|---|---|
|
|
|
|
|
PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4yh7 | 1 | Q64487 | 95.43 | 0.0 |
X-RAY |
2015-05-06 | VAL | A:283 | A:310 | 4.0 | 0.026 | E | -97.9 | 137.9 | 4.0 | 0.026 | 0.0 | ||||||
| 4yfd | 2 | Q64487 | 99.39 | 0.0 |
X-RAY |
2015-05-06 | VAL | B:283 | A:310 | 5.0 | 0.032 | E | -99.2 | 134.6 | 5.0 | 0.032 | 0.0 | ||||||
| 4yfg | 1 | Q64487 | 97.15 | 0.0 |
X-RAY |
2015-05-06 | VAL | A:273 | B:300 | 7.0 | 0.045 | E | -112.2 | 122.1 | 0.0 | 0.0 | 0.045 |
B:Q64487:0.045 |
|||||
| VAL | B:273 | A:300 | 2.0 | 0.013 | E | -113.4 | 120.8 | 2.0 | 0.013 | 0.0 | |||||||||||||
| 4y61 | 1 | Q64487 | 99.23 | 0.0 |
X-RAY |
2015-06-03 | VAL | A:283 | A:310 | 6.0 | 0.039 | E | -108.6 | 127.0 | 6.0 | 0.039 | 0.0 | ||||||
| 5xwt | 1 | Q64487 | 99.23 | 0.0 |
X-RAY |
2018-06-06 | VAL | A:289 | A:310 | 2.0 | 0.013 | E | -113.2 | 122.0 | 2.0 | 0.013 | 0.0 | ||||||
| VAL | C:289 | C:310 | 3.0 | 0.019 | E | -114.0 | 122.0 | 3.0 | 0.019 | 0.0 | |||||||||||||
| 7ceg | 1 | Q64487 | 96.68 | 0.0 |
X-RAY |
2021-02-24 | VAL | A:273 | A:300 | 6.0 | 0.039 | E | -110.7 | 127.3 | 6.0 | 0.039 | 0.0 | ||||||
| 4rca | 1 | P23468 | 99.34 | 0.0 |
X-RAY |
2014-11-19 | VAL | A:283 | A:303 | 7.0 | 0.045 | E | -136.5 | 119.6 | 7.0 | 0.045 | 0.0 | ||||||
| 5xwu | 1 | Q64487 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | VAL | A:289 | A:310 | 5.0 | 0.032 | E | -123.4 | 127.3 | 5.0 | 0.032 | 0.0 | ||||||
| VAL | C:289 | C:310 | 6.0 | 0.039 | E | -122.6 | 128.4 | 6.0 | 0.039 | 0.0 | |||||||||||||
| 5wy8 | 1 | P23468 | 100.0 | 0.0 |
X-RAY |
2017-11-22 | VAL | A:283 | A:303 | 6.0 | 0.039 | E | -114.2 | 123.4 | 6.0 | 0.039 | 0.0 | ||||||
| 5y32 | 2 | Q64487 | 100.0 | 0.0 |
X-RAY |
2017-08-16 | VAL | B:283 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5xnp | 2 | P23468 | 97.0 | 0.0 |
X-RAY |
2018-01-24 | VAL | C:274 | D:294 | 4.0 | 0.026 | E | -121.0 | 141.0 | 4.0 | 0.026 | 0.0 |
SO4 |
5.467 |
CG1 |
O2 |
||
| VAL | D:274 | E:294 | 3.0 | 0.019 | E | -126.3 | 138.8 | 3.0 | 0.019 | 0.0 |
SO4 |
5.341 |
CG1 |
O4 |
|||||||||
AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p23468-f1 | 1 | P23468 | 100.0 | 0.0 | VAL | A:303 | A:303 | 4.0 | 0.026 | E | -116.9 | 132.9 | |