Variant
| Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chr9 | 8521481 | . | C | A | CCDS6472.2:NM_130391.3:c.757Gtt>Ttt_NP_569075.2:p.253V>F | Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA. |
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PDB
| Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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| PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
| 4yh7 | 1 | Q64487 | 95.43 | 0.0 |
X-RAY |
2015-05-06 | VAL | A:233 | A:260 | 26.0 | 0.168 | E | -160.3 | 137.2 | 26.0 | 0.168 | 0.0 | ||||||
| 4yfd | 2 | Q64487 | 99.39 | 0.0 |
X-RAY |
2015-05-06 | VAL | B:233 | A:260 | 21.0 | 0.135 | E | -158.6 | 141.0 | 21.0 | 0.135 | 0.0 |
NAG |
5.230 |
CA |
C8 |
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| 4yfg | 1 | Q64487 | 97.15 | 0.0 |
X-RAY |
2015-05-06 | VAL | A:223 | B:250 | 27.0 | 0.174 | E | -159.6 | 148.3 | 27.0 | 0.174 | 0.0 |
NAG |
5.898 |
C |
C1 |
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| VAL | B:223 | A:250 | 31.0 | 0.2 | E | -160.1 | 145.8 | 31.0 | 0.2 | 0.0 |
NAG |
5.484 |
C |
O7 |
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| 4y61 | 1 | Q64487 | 99.23 | 0.0 |
X-RAY |
2015-06-03 | VAL | A:233 | A:260 | 23.0 | 0.148 | E | -172.4 | 139.5 | 23.0 | 0.148 | 0.0 |
NAG |
4.051 |
CA |
C8 |
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| 5xwt | 1 | Q64487 | 99.23 | 0.0 |
X-RAY |
2018-06-06 | VAL | A:239 | A:260 | 19.0 | 0.123 | E | -155.5 | 132.9 | 19.0 | 0.123 | 0.0 |
NAG |
5.953 |
C |
C1 |
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| VAL | C:239 | C:260 | 16.0 | 0.103 | E | -156.7 | 133.0 | 16.0 | 0.103 | 0.0 |
NAG NAG |
4.092 9.343 |
N N |
O7 C8 |
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| 7ceg | 1 | Q64487 | 96.68 | 0.0 |
X-RAY |
2021-02-24 | VAL | A:223 | A:250 | 50.0 | 0.323 | E | -155.3 | 138.9 | 50.0 | 0.323 | 0.0 |
NAG |
4.017 |
CA |
O7 |
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| 4rca | 1 | P23468 | 99.34 | 0.0 |
X-RAY |
2014-11-19 | VAL | A:233 | A:253 | 12.0 | 0.077 | E | -120.5 | 143.5 | 12.0 | 0.077 | 0.0 |
NAG |
6.837 |
C |
C1 |
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| 5xwu | 1 | Q64487 | 100.0 | 0.0 |
X-RAY |
2018-06-06 | VAL | A:239 | A:260 | 22.0 | 0.142 | E | -148.0 | 146.5 | 22.0 | 0.142 | 0.0 |
NAG |
4.331 |
CA |
C8 |
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| VAL | C:239 | C:260 | 22.0 | 0.142 | E | -147.3 | 146.1 | 22.0 | 0.142 | 0.0 |
NAG |
5.079 |
CA |
C8 |
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| 5wy8 | 1 | P23468 | 100.0 | 0.0 |
X-RAY |
2017-11-22 | VAL | A:233 | A:253 | 15.0 | 0.097 | E | -137.9 | 150.8 | 15.0 | 0.097 | 0.0 |
NAG FUC |
4.194 7.750 |
CA N |
O7 O2 |
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| 5y32 | 2 | Q64487 | 100.0 | 0.0 |
X-RAY |
2017-08-16 | VAL | B:233 | NA:NA | DO | NA | DO | DO | DO | NA | NA | NA | ||||||
| 5xnp | 2 | P23468 | 97.0 | 0.0 |
X-RAY |
2018-01-24 | VAL | C:224 | D:244 | 23.0 | 0.148 | -127.8 | 161.4 | 23.0 | 0.148 | 0.0 |
HOH |
9.711 |
CG1 |
O |
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| VAL | D:224 | E:244 | 22.0 | 0.142 | -128.2 | 155.3 | 22.0 | 0.142 | 0.0 |
HOH |
9.906 |
CG1 |
O |
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AlphaFold DB
| Entity | Residue | Monomer | View | ||||||||||
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| ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
| af-p23468-f1 | 1 | P23468 | 100.0 | 0.0 | VAL | A:253 | A:253 | 18.0 | 0.116 | E | -149.5 | 136.2 | |