Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8521513 . G A CCDS6472.2:NM_130391.3:c.725cCc>cTc_NP_569075.2:p.242P>L Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 PRO A:222 A:249 10.0 0.069 -96.1 115.7 10.0 0.069 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 PRO B:222 A:249 7.0 0.048 -79.9 116.3 7.0 0.048 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 PRO A:212 B:239 8.0 0.055 -93.4 118.7 8.0 0.055 0.0
PRO B:212 A:239 7.0 0.048 -91.8 119.5 7.0 0.048 0.0
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 PRO A:222 A:249 11.0 0.076 -61.6 135.5 11.0 0.076 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 PRO A:228 A:249 11.0 0.076 -66.6 111.6 11.0 0.076 0.0
PRO C:228 C:249 10.0 0.069 -66.2 111.6 10.0 0.069 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 PRO A:212 A:239 14.0 0.097 -68.5 132.5 14.0 0.097 0.0
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 PRO A:222 A:242 8.0 0.055 -69.0 119.8 8.0 0.055 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 PRO A:228 A:249 14.0 0.097 -69.0 133.7 14.0 0.097 0.0
PRO C:228 C:249 12.0 0.083 -68.8 133.3 12.0 0.083 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 PRO A:222 A:242 13.0 0.09 -71.2 133.5 13.0 0.09 0.0
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 PRO B:222 NA:NA DO NA DO DO DO NA NA NA
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 PRO C:213 D:233 12.0 0.083 -61.9 128.5 12.0 0.083 0.0
PRO D:213 E:233 12.0 0.083 -62.4 129.4 12.0 0.083 0.0

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 PRO A:242 A:242 12.0 0.083 -67.7 141.4