Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8521544 . G A CCDS6472.2:NM_130391.3:c.694Cgc>Tgc_NP_569075.2:p.232R>C Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
pdb_id: 
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label_seq_id: 
label_comp_id: 
auth_asym_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 ARG A:212 A:239 115.0 0.511 -89.3 177.7 115.0 0.511 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 ARG B:212 A:239 161.0 0.716 -118.7 132.1 161.0 0.716 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 ARG A:202 B:229 114.0 0.507 -62.8 135.4 114.0 0.507 0.0
ARG B:202 A:229 121.0 0.538 -60.3 136.2 109.0 0.484 0.054 A:Q64487:0.053
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 ARG A:212 A:239 176.0 0.782 -75.3 97.0 160.0 0.711 0.071 B:Q810C0:0.071
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 ARG A:218 A:239 218.0 0.969 -73.0 119.4 218.0 0.969 0.0
ARG C:218 C:239 219.0 0.973 -71.9 116.1 219.0 0.973 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 ARG A:202 A:229 177.0 0.787 S -98.7 100.2 49.0 0.218 0.569 B:Q8BYM5:0.569
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 ARG A:212 A:232 208.0 0.924 -64.0 130.4 208.0 0.924 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 ARG A:218 A:239 219.0 0.973 -81.0 135.7 219.0 0.973 0.0
ARG C:218 C:239 221.0 0.982 -81.1 140.7 221.0 0.982 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 ARG A:212 A:232 199.0 0.884 -70.0 -39.9 137.0 0.609 0.275 B:Q9NZN1:0.276
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 ARG B:212 NA:NA DO NA DO DO DO NA NA NA
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 ARG C:203 D:223 216.0 0.96 -61.1 125.9 216.0 0.96 0.0 CL
HOH
 7.258
4.641
 N
N
 CL
O
ARG D:203 E:223 203.0 0.902 -70.1 125.7 203.0 0.902 0.0 CL
HOH
 7.555
4.861
 CA
N
 CL
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 ARG A:232 A:232 223.0 0.991 -60.2 144.3