Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8526629 . C A CCDS6472.2:NM_130391.3:c.566aGa>aTa_NP_569075.2:p.189R>I Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 ARG A:169 A:196 118.0 0.524 E -95.1 157.1 9.0 0.04 0.484 B:P59823:0.484
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 ARG B:169 A:196 123.0 0.547 E -92.5 127.3 8.0 0.036 0.511 A:Q61730:0.511
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 ARG A:169 A:196 125.0 0.556 E -93.3 126.1 125.0 0.556 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 ARG A:175 A:196 208.0 0.924 360.0 83.8 171.0 0.76 0.164 B:Q96NI6:0.164
ARG C:175 C:196 199.0 0.884 360.0 83.0 165.0 0.733 0.151 D:Q96NI6:0.151
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 ARG A:169 A:189 88.0 0.391 -109.3 -89.5 88.0 0.391 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 ARG A:175 A:196 178.0 0.791 360.0 86.1 121.0 0.538 0.253 B:Q2WF71:0.253
ARG C:175 C:196 216.0 0.96 360.0 85.9 142.0 0.631 0.329 D:Q2WF71:0.329
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 ARG A:169 A:189 112.0 0.498 E -119.2 122.9 16.0 0.071 0.427 B:Q9NZN1:0.427
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 ARG B:169 A:196 108.0 0.48 E -95.7 133.8 8.0 0.036 0.444 A:P59823:0.444
 HOH
 7.452
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 ARG A:189 A:189 167.0 0.742 E -93.5 115.9