Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8633403 . G A CCDS6472.2:NM_130391.3:c.266aCt>aTt_NP_569075.2:p.89T>I Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 THR A:69 A:96 18.0 0.129 T -113.3 142.5 18.0 0.129 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 THR B:69 A:96 42.0 0.3 T -128.1 136.4 42.0 0.3 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 THR A:69 B:96 34.0 0.243 T -119.6 149.6 34.0 0.243 0.0
THR B:69 A:96 24.0 0.171 T -118.2 153.6 23.0 0.164 0.007 A:Q64487:0.007
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 THR A:69 A:96 29.0 0.207 T -128.1 135.8 29.0 0.207 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 THR A:75 A:96 25.0 0.179 T -145.6 142.1 25.0 0.179 0.0
THR C:75 C:96 9.0 0.064 T -146.2 141.3 9.0 0.064 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 THR A:69 A:96 49.0 0.35 T -85.6 144.3 49.0 0.35 0.0
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 THR A:69 A:89 41.0 0.293 T -121.9 143.0 41.0 0.293 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 THR A:75 A:96 44.0 0.314 T -104.1 138.6 44.0 0.314 0.0
THR C:75 C:96 48.0 0.343 T -103.8 140.0 48.0 0.343 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 THR A:69 A:89 18.0 0.129 S 76.2 -81.6 1.0 0.007 0.122 B:Q9NZN1:0.121
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 THR B:69 A:96 34.0 0.243 T -119.5 138.4 28.0 0.2 0.043 A:P59823:0.043
 HOH
 2.678
 N
 O
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 THR C:69 D:89 41.0 0.293 T -102.3 135.8 41.0 0.293 0.0
THR D:69 E:89 39.0 0.279 T -102.3 135.5 39.0 0.279 0.0
2yd6 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 THR A:72 A:89 38.0 0.271 T -128.3 134.9 38.0 0.271 0.0 FLC
HOH
 8.979
2.774
 N
O
 OG2
O
2yd7 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 THR A:72 A:89 31.0 0.221 T -126.5 137.4 31.0 0.221 0.0 PO4
HOH
 9.448
6.424
 OG1
O
 O1
O
THR B:72 B:89 37.0 0.264 T -118.4 140.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 THR A:89 A:89 30.0 0.214 T -76.2 141.9