Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chr9 8636800 . A C CCDS6472.2:NM_130391.3:c.109Tct>Gct_NP_569075.2:p.37S>A Homo sapiens protein tyrosine phosphatase, receptor type D (PTPRD), transcript variant 1, mRNA.
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
4yh7 1 Q64487 95.43 0.0 X-RAY
 2015-05-06 SER A:17 A:44 31.0 0.27 S -50.0 132.0 31.0 0.27 0.0
4yfd 2 Q64487 99.39 0.0 X-RAY
 2015-05-06 SER B:17 A:44 28.0 0.243 T -50.0 133.4 28.0 0.243 0.0
4yfg 1 Q64487 97.15 0.0 X-RAY
 2015-05-06 SER A:17 B:44 31.0 0.27 S -50.4 136.4 14.0 0.122 0.148 B:Q64487:0.148
SER B:17 A:44 9.0 0.078 S -50.9 137.8 2.0 0.017 0.061 A:Q64487:0.061
4y61 1 Q64487 99.23 0.0 X-RAY
 2015-06-03 SER A:17 A:44 26.0 0.226 T -49.6 133.8 26.0 0.226 0.0
5xwt 1 Q64487 99.23 0.0 X-RAY
 2018-06-06 SER A:23 A:44 48.0 0.417 T -63.0 143.9 48.0 0.417 0.0
SER C:23 C:44 28.0 0.243 T -63.5 143.4 28.0 0.243 0.0
7ceg 1 Q64487 96.68 0.0 X-RAY
 2021-02-24 SER A:17 A:44 46.0 0.4 T -59.6 132.9 46.0 0.4 0.0
4rca 1 P23468 99.34 0.0 X-RAY
 2014-11-19 SER A:17 A:37 33.0 0.287 T -55.6 126.6 33.0 0.287 0.0
5xwu 1 Q64487 100.0 0.0 X-RAY
 2018-06-06 SER A:23 A:44 40.0 0.348 T -66.6 141.4 40.0 0.348 0.0
SER C:23 C:44 40.0 0.348 T -66.8 142.8 40.0 0.348 0.0
5wy8 1 P23468 100.0 0.0 X-RAY
 2017-11-22 SER A:17 A:37 21.0 0.183 T -57.2 138.4 19.0 0.165 0.018 B:Q9NZN1:0.017
5y32 2 Q64487 100.0 0.0 X-RAY
 2017-08-16 SER B:17 A:44 25.0 0.217 T -51.0 129.7 19.0 0.165 0.052 A:P59823:0.052
 HOH
 2.907
 OG
 O
5xnp 2 P23468 97.0 0.0 X-RAY
 2018-01-24 SER C:17 D:37 46.0 0.4 T -84.7 119.8 46.0 0.4 0.0
SER D:17 E:37 45.0 0.391 T -85.6 118.2 45.0 0.391 0.0
2yd6 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 SER A:20 A:37 48.0 0.417 T -49.6 133.5 48.0 0.417 0.0 HOH
 2.773
 O
 O
2yd7 1 Q3KPJ2 96.62 2e-131 X-RAY
 2011-04-13 SER A:20 A:37 49.0 0.426 T -44.0 132.9 49.0 0.426 0.0 HOH
 5.367
 O
 O
SER B:20 B:37 39.0 0.339 T -51.2 129.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p23468-f1 1 P23468 100.0 0.0 SER A:37 A:37 43.0 0.374 T -53.0 135.6