Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135738541 . C A CCDS14659.1:NM_000074.2:c.373Cat>Aat_NP_000065.1:p.125H>N Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 HIS A:10 A:125 43.0 0.221 E -154.5 124.4 2.0 0.01 0.211 A:P29965:0.21
 HOH
 1.995
 NE2
 H2
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 HIS A:10 A:125 46.0 0.236 E -124.2 122.3 4.0 0.021 0.215 B:P29965:0.215
HIS B:10 B:125 47.0 0.241 E -121.4 120.0 3.0 0.015 0.226 C:P29965:0.226
HIS C:10 C:125 46.0 0.236 E -121.1 121.1 4.0 0.021 0.215 A:P29965:0.215
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 HIS A:10 A:125 42.0 0.215 E -147.5 117.5 2.0 0.01 0.205 B:P29965:0.205
 HOH
 2.917
 NE2
 O
HIS B:10 B:125 42.0 0.215 E -150.1 117.4 3.0 0.015 0.2 C:P29965:0.2
 HOH
 2.872
 NE2
 O
HIS C:10 C:125 43.0 0.221 E -148.3 118.1 2.0 0.01 0.211 A:P29965:0.21
 PEG
HOH
 7.839
2.959
 O
NE2
 C3
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 HIS A:10 A:125 41.0 0.21 E -146.6 118.1 3.0 0.015 0.195 B:P29965:0.195
 HOH
 3.032
 NE2
 O
HIS B:10 B:125 42.0 0.215 E -148.8 117.4 2.0 0.01 0.205 C:P29965:0.205
 HOH
 2.969
 NE2
 O
HIS C:10 C:125 43.0 0.221 E -145.0 118.1 3.0 0.015 0.206 A:P29965:0.205
 HOH
 2.808
 NE2
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 HIS A:13 A:125 45.0 0.231 E -138.8 114.0 0.0 0.0 0.231 B:P29965:0.231
HIS B:13 B:125 46.0 0.236 E -137.4 115.2 1.0 0.005 0.231 C:P29965:0.231
HIS C:13 C:125 46.0 0.236 E -138.0 118.1 0.0 0.0 0.236 A:P29965:0.236
HIS D:13 D:125 46.0 0.236 E -139.0 113.6 NA NA NA
HIS E:13 E:125 45.0 0.231 E -134.8 118.5 NA NA NA
HIS F:13 F:125 45.0 0.231 E -136.2 117.4 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 HIS A:6 A:125 50.0 0.256 E -162.8 116.7 1.0 0.005 0.251 A:P29965:0.251
 HOH
 5.365
 NE2
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 HIS A:5 A:125 49.0 0.251 E -144.9 120.4 1.0 0.005 0.246 B:P29965:0.246
 HOH
 4.255
 CE1
 O
HIS B:5 B:125 49.0 0.251 E -140.8 123.9 1.0 0.005 0.246 C:P29965:0.246
 LKJ
HOH
 7.466
5.682
 CE1
CE1
 C28
O
HIS C:5 C:125 75.0 0.385 E -132.2 123.0 75.0 0.385 0.0 LKJ
HOH
 2.766
2.824
 CE1
O
 O6
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 HIS A:125 A:125 39.0 0.2 E -143.7 119.2