Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741226 . C A CCDS14659.1:NM_000074.2:c.438taC>taA_NP_000065.1:p.146Y>* Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 TYR A:31 A:146 114.0 0.496 -90.4 161.9 114.0 0.496 0.0 HOH
 2.444
 H
 H2
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 TYR A:31 A:146 85.0 0.37 -106.0 -171.9 59.0 0.257 0.113 E:None:0.113
TYR B:31 B:146 87.0 0.378 -101.4 -172.8 59.0 0.257 0.121 G:None:0.122
TYR C:31 C:146 85.0 0.37 -105.7 -177.2 60.0 0.261 0.109 I:None:0.109
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 TYR A:31 A:146 100.0 0.435 -96.9 172.8 65.0 0.283 0.152 E:None:0.148
B:P29965:0.004
 TMO
HOH
 9.465
2.703
 OH
OH
 CAD
O
TYR B:31 B:146 100.0 0.435 -101.9 171.3 60.0 0.261 0.174 G:None:0.174
 TMO
HOH
 9.477
2.740
 OH
OH
 CAA
O
TYR C:31 C:146 97.0 0.422 -101.5 173.2 62.0 0.27 0.152 A:P29965:0.004
I:None:0.148
 PEG
TMO
HOH
 3.092
9.672
2.689
 O
OH
OH
 O4
CAD
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 TYR A:31 A:146 100.0 0.435 -93.6 163.3 64.0 0.278 0.157 E:None:0.157
 TMO
PEG
HOH
 9.141
9.194
2.722
 OH
OH
OH
 CAD
O4
O
TYR B:31 B:146 102.0 0.443 -92.2 167.0 66.0 0.287 0.156 G:None:0.157
 TMO
PEG
HOH
 9.131
9.043
2.665
 OH
OH
OH
 CAB
C2
O
TYR C:31 C:146 100.0 0.435 -94.9 168.6 62.0 0.27 0.165 I:None:0.165
 TMO
PEG
HOH
 8.943
9.374
2.774
 OH
OH
OH
 CAB
C1
O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 TYR A:34 A:146 99.0 0.43 -89.5 175.7 99.0 0.43 0.0
TYR B:34 B:146 101.0 0.439 -89.0 179.7 66.0 0.287 0.152 G:P25942:0.152
TYR C:34 C:146 101.0 0.439 -87.5 177.9 67.0 0.291 0.148 H:P25942:0.148
TYR D:34 D:146 100.0 0.435 -80.1 -178.5 NA NA NA
TYR E:34 E:146 101.0 0.439 -84.9 179.3 NA NA NA
TYR F:34 F:146 100.0 0.435 -87.4 179.2 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 TYR A:27 A:146 100.0 0.435 -81.1 168.9 100.0 0.435 0.0 HOH
 3.275
 O
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 TYR A:26 A:146 99.0 0.43 -115.5 174.5 97.0 0.422 0.008 B:P29965:0.009
 HOH
 6.459
 CE2
 O
TYR B:26 B:146 91.0 0.396 -100.0 167.8 90.0 0.391 0.005 C:P29965:0.004
 HOH
 2.939
 OH
 O
TYR C:26 C:146 211.0 0.917 S -125.3 150.8 139.0 0.604 0.313 A:P29965:0.313
 LKJ
HOH
 3.611
3.324
 CD1
N
 O5
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 TYR A:146 A:146 102.0 0.443 -86.8 161.9