Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741287 . G A CCDS14659.1:NM_000074.2:c.499Gga>Aga_NP_000065.1:p.167G>R Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 GLY A:52 A:167 11.0 0.147 E 144.5 -177.3 2.0 0.027 0.12 A:P29965:0.12
 HOH
 3.219
 CA
 H2
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 GLY A:52 A:167 12.0 0.16 E 149.1 179.5 12.0 0.16 0.0
GLY B:52 B:167 13.0 0.173 E 146.2 -176.2 13.0 0.173 0.0
GLY C:52 C:167 12.0 0.16 E 150.8 179.5 12.0 0.16 0.0
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 GLY A:52 A:167 13.0 0.173 E 144.7 -169.6 10.0 0.133 0.04 C:P29965:0.04
 PEG
HOH
 9.295
3.190
 O
CA
 O4
O
GLY B:52 B:167 13.0 0.173 E 146.4 -169.4 10.0 0.133 0.04 A:P29965:0.04
 HOH
 3.198
 CA
 O
GLY C:52 C:167 14.0 0.187 E 144.8 -165.2 11.0 0.147 0.04 B:P29965:0.04
 HOH
 3.119
 CA
 O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 GLY A:52 A:167 14.0 0.187 E 150.3 -175.9 11.0 0.147 0.04 C:P29965:0.04
 HOH
 3.247
 CA
 O
GLY B:52 B:167 14.0 0.187 E 147.7 -173.6 11.0 0.147 0.04 A:P29965:0.04
 HOH
 3.085
 CA
 O
GLY C:52 C:167 14.0 0.187 E 145.4 -179.8 11.0 0.147 0.04 B:P29965:0.04
 HOH
 3.229
 CA
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 GLY A:55 A:167 9.0 0.12 E 176.5 -163.7 8.0 0.107 0.013 C:P29965:0.013
GLY B:55 B:167 9.0 0.12 E 179.3 -158.0 8.0 0.107 0.013 A:P29965:0.013
GLY C:55 C:167 7.0 0.093 E 177.3 -158.3 7.0 0.093 0.0
GLY D:55 D:167 7.0 0.093 E 172.6 -162.2 NA NA NA
GLY E:55 E:167 8.0 0.107 E 168.9 -162.9 NA NA NA
GLY F:55 F:167 8.0 0.107 E 179.6 -160.2 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 GLY A:48 A:167 9.0 0.12 E 152.7 -170.9 7.0 0.093 0.027 A:P29965:0.027
 HOH
 3.624
 CA
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 GLY A:47 A:167 19.0 0.253 E 147.0 -159.1 19.0 0.253 0.0 LKJ
HOH
 7.430
3.729
 O
C
 C51
O
GLY B:47 B:167 12.0 0.16 E 162.8 -155.6 12.0 0.16 0.0 HOH
 6.934
 O
 O
GLY C:47 C:167 3.0 0.04 E 175.5 172.5 3.0 0.04 0.0 HOH
 6.748
 N
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 GLY A:167 A:167 15.0 0.2 E 159.3 -173.5