Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741298 . T A CCDS14659.1:NM_000074.2:c.510taT>taA_NP_000065.1:p.170Y>* Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 TYR A:55 A:170 80.0 0.348 E -81.4 122.8 4.0 0.017 0.331 A:P29965:0.109
A:P29965:0.27
 HOH
 6.806
 OH
 O
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 TYR A:55 A:170 80.0 0.348 E -102.4 122.2 4.0 0.017 0.331 C:P29965:0.265
B:P29965:0.126
TYR B:55 B:170 79.0 0.343 E -98.6 118.4 3.0 0.013 0.33 C:P29965:0.126
A:P29965:0.261
TYR C:55 C:170 82.0 0.357 E -100.2 119.8 4.0 0.017 0.34 A:P29965:0.122
B:P29965:0.274
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 TYR A:55 A:170 78.0 0.339 E -91.1 124.7 5.0 0.022 0.317 C:P29965:0.248
B:P29965:0.117
 TRS
HOH
 6.139
2.382
 CB
OH
 O3
O
TYR B:55 B:170 73.0 0.317 E -89.4 122.7 3.0 0.013 0.304 C:P29965:0.109
A:P29965:0.235
 TRS
HOH
 6.370
2.370
 CB
OH
 O3
O
TYR C:55 C:170 78.0 0.339 E -91.9 123.4 4.0 0.017 0.322 A:P29965:0.113
B:P29965:0.257
 TRS
HOH
 6.853
2.598
 CB
OH
 O3
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 TYR A:55 A:170 77.0 0.335 E -95.7 126.6 4.0 0.017 0.318 C:P29965:0.257
B:P29965:0.109
 TRS
HOH
 7.335
2.443
 CB
OH
 C2
O
TYR B:55 B:170 79.0 0.343 E -87.9 123.1 4.0 0.017 0.326 C:P29965:0.117
A:P29965:0.252
 TRS
HOH
 7.215
2.316
 CB
OH
 C1
O
TYR C:55 C:170 80.0 0.348 E -88.6 121.5 4.0 0.017 0.331 A:P29965:0.113
B:P29965:0.265
 TRS
HOH
 6.990
2.303
 CB
OH
 C3
O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 TYR A:58 A:170 76.0 0.33 E -115.4 108.4 3.0 0.013 0.317 C:P29965:0.252
B:P29965:0.117
TYR B:58 B:170 76.0 0.33 E -117.8 115.1 3.0 0.013 0.317 C:P29965:0.109
A:P29965:0.261
TYR C:58 C:170 78.0 0.339 E -115.8 111.7 4.0 0.017 0.322 A:P29965:0.109
B:P29965:0.261
TYR D:58 D:170 78.0 0.339 E -108.9 113.4 NA NA NA
TYR E:58 E:170 81.0 0.352 E -119.1 107.9 NA NA NA
TYR F:58 F:170 78.0 0.339 E -112.3 107.1 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 TYR A:51 A:170 80.0 0.348 E -93.7 105.4 3.0 0.013 0.335 A:P29965:0.283
A:P29965:0.104
 HOH
 8.112
 N
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 TYR A:50 A:170 99.0 0.43 E -90.3 121.1 68.0 0.296 0.134 C:P29965:0.017
B:P29965:0.117
 LKJ
HOH
 3.100
4.973
 OH
OH
 C21
O
TYR B:50 B:170 87.0 0.378 E -78.1 122.3 25.0 0.109 0.269 C:P29965:0.078
A:P29965:0.191
 LKJ
HOH
 3.865
2.683
 CG
OH
 C34
O
TYR C:50 C:170 100.0 0.435 E -95.1 119.3 56.0 0.243 0.192 A:P29965:0.017
B:P29965:0.174
 LKJ
HOH
 3.160
2.904
 CE2
OH
 N4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 TYR A:170 A:170 76.0 0.33 E -83.6 117.6