Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741302 . T A CCDS14659.1:NM_000074.2:c.514Tat>Aat_NP_000065.1:p.172Y>N Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 TYR A:57 A:172 41.0 0.178 E -142.7 149.5 0.0 0.0 0.178 A:P29965:0.178
 HOH
 3.024
 CE2
 H1
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 TYR A:57 A:172 45.0 0.196 E -150.5 163.6 1.0 0.004 0.192 B:P29965:0.191
TYR B:57 B:172 46.0 0.2 E -148.2 166.0 0.0 0.0 0.2 C:P29965:0.2
TYR C:57 C:172 45.0 0.196 E -146.5 162.4 0.0 0.0 0.196 A:P29965:0.196
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 TYR A:57 A:172 38.0 0.165 E -143.7 159.1 0.0 0.0 0.165 B:P29965:0.165
 HOH
 3.245
 CB
 O
TYR B:57 B:172 41.0 0.178 E -142.6 156.8 0.0 0.0 0.178 C:P29965:0.178
 HOH
 3.311
 CB
 O
TYR C:57 C:172 43.0 0.187 E -143.0 156.1 0.0 0.0 0.187 A:P29965:0.187
 HOH
 3.285
 CB
 O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 TYR A:57 A:172 39.0 0.17 E -145.8 156.0 0.0 0.0 0.17 B:P29965:0.17
 HOH
 3.317
 CB
 O
TYR B:57 B:172 38.0 0.165 E -142.4 154.6 0.0 0.0 0.165 C:P29965:0.165
 HOH
 3.237
 CB
 O
TYR C:57 C:172 44.0 0.191 E -143.3 160.9 0.0 0.0 0.191 A:P29965:0.191
 HOH
 3.603
 CB
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 TYR A:60 A:172 44.0 0.191 E -152.7 170.7 0.0 0.0 0.191 B:P29965:0.191
TYR B:60 B:172 44.0 0.191 E -153.4 170.3 1.0 0.004 0.187 C:P29965:0.187
TYR C:60 C:172 46.0 0.2 E -149.8 165.9 0.0 0.0 0.2 A:P29965:0.2
TYR D:60 D:172 42.0 0.183 E -148.9 164.4 NA NA NA
TYR E:60 E:172 43.0 0.187 E -151.3 164.9 NA NA NA
TYR F:60 F:172 44.0 0.191 E -149.2 174.6 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 TYR A:53 A:172 40.0 0.174 E -138.9 158.2 0.0 0.0 0.174 A:P29965:0.174
 HOH
 8.361
 OH
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 TYR A:52 A:172 64.0 0.278 E -130.1 154.5 13.0 0.057 0.221 B:P29965:0.222
 LKJ
HOH
 6.213
3.418
 CB
CE2
 C21
O
TYR B:52 B:172 65.0 0.283 E -136.6 159.5 14.0 0.061 0.222 C:P29965:0.222
 LKJ
HOH
 3.887
3.771
 CB
CG
 C27
O
TYR C:52 C:172 49.0 0.213 E -143.4 157.0 49.0 0.213 0.0 LKJ
HOH
 3.231
2.892
 OH
OH
 C43
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 TYR A:172 A:172 49.0 0.213 E -139.1 148.4