Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741386 . A C CCDS14659.1:NM_000074.2:c.598Aga>Cga_NP_000065.1:p.200R>R Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 ARG A:85 A:200 113.0 0.502 S -124.7 148.7 113.0 0.502 0.0 HOH
 1.960
 O
 H1
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 ARG A:85 A:200 174.0 0.773 S -140.5 151.7 174.0 0.773 0.0
ARG B:85 B:200 176.0 0.782 S -142.0 151.0 176.0 0.782 0.0
ARG C:85 C:200 177.0 0.787 S -142.3 153.3 176.0 0.782 0.005 G:None:0.004
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 ARG A:85 A:200 179.0 0.796 S -125.1 153.5 179.0 0.796 0.0 NAG
PEG
ETE
PEG
HOH
 9.649
8.280
4.045
9.884
2.841
 C
O
O
NH2
NE
 C8
O1
C12
C4
O
ARG B:85 B:200 178.0 0.791 S -127.2 153.5 178.0 0.791 0.0 NAG
NAG
PEG
ETE
HOH
 9.792
9.669
8.067
3.571
2.912
 O
C
O
O
NE
 C8
C8
C2
C25
O
ARG C:85 C:200 178.0 0.791 S -128.0 153.1 178.0 0.791 0.0 NAG
NAG
PEG
1PE
HOH
 9.894
9.482
7.821
3.625
2.792
 O
C
O
O
NE
 O6
C8
O1
C22
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 ARG A:85 A:200 185.0 0.822 S -125.0 150.8 185.0 0.822 0.0 PEG
HOH
 4.075
3.195
 N
NE
 O2
O
ARG B:85 B:200 115.0 NA S -122.9 152.7 115.0 NA NA NAG
PEG
HOH
 9.906
4.243
2.978
 O
N
NE
 C8
O1
O
ARG C:85 C:200 117.0 NA S -122.5 150.2 117.0 NA NA NAG
PEG
HOH
 9.907
4.132
2.943
 O
O
NE
 C8
C3
O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 ARG A:88 A:200 138.0 0.613 S -139.0 140.2 40.0 0.178 0.435 C:P29965:0.027
H:P25942:0.422
ARG B:88 B:200 134.0 0.596 S -141.1 143.0 129.0 0.573 0.023 A:P29965:0.022
ARG C:88 C:200 136.0 0.604 S -139.5 136.0 28.0 0.124 0.48 G:P25942:0.467
B:P29965:0.022
ARG D:88 D:200 135.0 0.6 S -131.8 136.3 NA NA NA
ARG E:88 E:200 139.0 0.618 S -134.3 137.7 NA NA NA
ARG F:88 F:200 136.0 0.604 S -140.6 137.9 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 ARG A:81 A:200 122.0 0.542 S -142.3 159.9 122.0 0.542 0.0 NAG
HOH
 9.114
7.539
 C
O
 C8
O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 ARG A:80 A:200 178.0 0.791 S -127.2 157.0 178.0 0.791 0.0 NAG
NAG
HOH
 9.922
9.616
3.213
 O
C
CA
 O6
C8
O
ARG B:80 B:200 172.0 0.764 S -137.0 141.2 165.0 0.733 0.031 A:P29965:0.031
 NAG
HOH
 9.660
4.110
 C
N
 C8
O
ARG C:80 C:200 172.0 0.764 E -133.7 115.9 172.0 0.764 0.0 NAG
NAG
HOH
 9.578
9.193
3.934
 O
C
O
 O6
C8
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 ARG A:200 A:200 158.0 0.702 S -124.6 155.0