Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741443 . G A CCDS14659.1:NM_000074.2:c.655Ggg>Agg_NP_000065.1:p.219G>R Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 GLY A:104 A:219 13.0 0.173 E -93.0 125.7 0.0 0.0 0.173 A:P29965:0.173
 HOH
 2.083
 O
 H1
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 GLY A:104 A:219 8.0 0.107 E -117.0 124.3 3.0 0.04 0.067 B:P29965:0.067
GLY B:104 B:219 9.0 0.12 E -118.5 128.4 3.0 0.04 0.08 C:P29965:0.08
GLY C:104 C:219 7.0 0.093 E -115.0 126.8 2.0 0.027 0.066 A:P29965:0.067
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 GLY A:104 A:219 7.0 0.093 E -119.0 129.9 3.0 0.04 0.053 B:P29965:0.053
 TRS
TMO
HOH
 7.842
5.361
2.791
 O
N
O
 O1
CAA
O
GLY B:104 B:219 7.0 0.093 E -117.8 129.4 3.0 0.04 0.053 C:P29965:0.053
 TRS
TMO
HOH
 7.827
5.629
2.739
 O
CA
O
 O3
CAA
O
GLY C:104 C:219 8.0 0.107 E -116.3 131.8 3.0 0.04 0.067 A:P29965:0.067
 TRS
TMO
HOH
 8.074
5.130
2.813
 O
N
O
 O2
CAB
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 GLY A:104 A:219 8.0 0.107 E -107.9 130.2 5.0 0.067 0.04 B:P29965:0.04
 HOH
 2.587
 O
 O
GLY B:104 B:219 10.0 0.133 E -116.1 138.5 5.0 0.067 0.066 C:P29965:0.067
 HOH
 2.729
 O
 O
GLY C:104 C:219 8.0 0.107 E -111.2 135.9 4.0 0.053 0.054 A:P29965:0.053
 HOH
 2.725
 O
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 GLY A:107 A:219 23.0 0.307 79.2 112.9 11.0 0.147 0.16 B:P29965:0.16
GLY B:107 B:219 18.0 0.24 64.1 128.1 11.0 0.147 0.093 C:P29965:0.093
GLY C:107 C:219 19.0 0.253 78.9 89.1 8.0 0.107 0.146 A:P29965:0.147
H:P25942:0.013
GLY D:107 D:219 23.0 0.307 41.1 109.4 NA NA NA
GLY E:107 E:219 22.0 0.293 71.0 104.3 NA NA NA
GLY F:107 F:219 25.0 0.333 52.8 107.2 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 GLY A:100 A:219 3.0 0.04 E -120.2 126.7 0.0 0.0 0.04 A:P29965:0.04
 HOH
 7.313
 N
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 GLY A:99 A:219 36.0 0.48 -90.0 69.9 19.0 0.253 0.227 B:P29965:0.227
 HOH
 7.783
 C
 O
GLY B:99 B:219 22.0 0.293 71.4 70.5 8.0 0.107 0.186 C:P29965:0.187
GLY C:99 C:219 37.0 0.493 S 76.4 10.3 37.0 0.493 0.0 HOH
 7.020
 O
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 GLY A:219 A:219 9.0 0.12 E -103.5 130.8