Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741468 . G A CCDS14659.1:NM_000074.2:c.680gGa>gAa_NP_000065.1:p.227G>E Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 GLY A:112 A:227 13.0 0.173 E -166.4 177.6 0.0 0.0 0.173 A:P29965:0.173
 HOH
 4.583
 CA
 H1
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 GLY A:112 A:227 26.0 0.347 132.3 138.3 0.0 0.0 0.347 C:P29965:0.347
GLY B:112 B:227 27.0 0.36 118.4 137.4 0.0 0.0 0.36 A:P29965:0.36
GLY C:112 C:227 26.0 0.347 122.5 134.1 0.0 0.0 0.347 B:P29965:0.347
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 GLY A:112 A:227 16.0 0.213 E -174.1 171.0 0.0 0.0 0.213 C:P29965:0.213
 HOH
 4.605
 N
 O
GLY B:112 B:227 15.0 0.2 E -172.7 172.7 0.0 0.0 0.2 A:P29965:0.2
 HOH
 4.714
 N
 O
GLY C:112 C:227 16.0 0.213 E -174.8 170.7 0.0 0.0 0.213 B:P29965:0.213
 HOH
 5.326
 N
 O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 GLY A:112 A:227 17.0 0.227 E -174.6 170.8 0.0 0.0 0.227 C:P29965:0.227
 HOH
 4.548
 N
 O
GLY B:112 B:227 16.0 0.213 E -176.0 173.0 0.0 0.0 0.213 A:P29965:0.213
 HOH
 5.224
 N
 O
GLY C:112 C:227 15.0 0.2 E 177.1 174.6 0.0 0.0 0.2 B:P29965:0.2
 HOH
 5.094
 N
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 GLY A:115 A:227 14.0 0.187 E -163.7 170.3 0.0 0.0 0.187 C:P29965:0.187
GLY B:115 B:227 14.0 0.187 E -169.7 165.8 0.0 0.0 0.187 A:P29965:0.187
GLY C:115 C:227 14.0 0.187 E -168.8 166.4 0.0 0.0 0.187 B:P29965:0.187
GLY D:115 D:227 14.0 0.187 E -165.5 163.4 NA NA NA
GLY E:115 E:227 15.0 0.2 E -173.6 164.6 NA NA NA
GLY F:115 F:227 15.0 0.2 E -174.9 169.5 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 GLY A:108 A:227 12.0 0.16 E -167.0 164.3 0.0 0.0 0.16 A:P29965:0.16
 HOH
 7.887
 C
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 GLY A:107 A:227 19.0 0.253 E 169.9 -167.0 14.0 0.187 0.066 C:P29965:0.067
 LKJ
HOH
 5.796
6.573
 CA
CA
 O2
O
GLY B:107 B:227 14.0 0.187 E -166.8 166.2 0.0 0.0 0.187 A:P29965:0.187
 LKJ
HOH
 6.997
5.054
 N
CA
 C26
O
GLY C:107 C:227 15.0 0.2 E -165.5 176.3 0.0 0.0 0.2 B:P29965:0.2
 LKJ
HOH
 5.751
3.949
 N
N
 C29
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 GLY A:227 A:227 14.0 0.187 E -172.1 159.2