Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741475 . T A CCDS14659.1:NM_000074.2:c.687ttT>ttA_NP_000065.1:p.229F>L Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 PHE A:114 A:229 49.0 0.233 E -136.6 153.7 5.0 0.024 0.209 A:P29965:0.21
 HOH
 3.348
 CZ
 H1
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 PHE A:114 A:229 47.0 0.224 E -138.6 161.0 1.0 0.005 0.219 C:P29965:0.219
PHE B:114 B:229 45.0 0.214 E -139.5 162.5 1.0 0.005 0.209 A:P29965:0.21
PHE C:114 C:229 43.0 0.205 E -139.1 165.1 1.0 0.005 0.2 B:P29965:0.2
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 PHE A:114 A:229 49.0 0.233 E -135.4 149.8 1.0 0.005 0.228 C:P29965:0.229
 PEG
HOH
 6.910
3.060
 C
CD1
 O4
O
PHE B:114 B:229 45.0 0.214 E -137.9 148.4 1.0 0.005 0.209 A:P29965:0.21
 HOH
 3.059
 CD1
 O
PHE C:114 C:229 48.0 0.229 E -140.4 151.2 1.0 0.005 0.224 B:P29965:0.224
 HOH
 3.142
 CD1
 O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 PHE A:114 A:229 47.0 0.224 E -135.7 147.1 1.0 0.005 0.219 C:P29965:0.219
 HOH
 3.347
 CD1
 O
PHE B:114 B:229 46.0 0.219 E -135.2 150.6 2.0 0.01 0.209 A:P29965:0.21
 HOH
 3.261
 CD2
 O
PHE C:114 C:229 49.0 0.233 E -139.2 141.4 2.0 0.01 0.223 B:P29965:0.224
 HOH
 3.338
 CD1
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 PHE A:117 A:229 43.0 0.205 E -133.4 152.8 0.0 0.0 0.205 C:P29965:0.205
PHE B:117 B:229 42.0 0.2 E -133.8 151.5 1.0 0.005 0.195 A:P29965:0.195
PHE C:117 C:229 40.0 0.19 E -128.1 151.7 0.0 0.0 0.19 B:P29965:0.19
PHE D:117 D:229 44.0 0.21 E -132.4 155.9 NA NA NA
PHE E:117 E:229 42.0 0.2 E -133.6 154.9 NA NA NA
PHE F:117 F:229 43.0 0.205 E -134.3 153.4 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 PHE A:110 A:229 48.0 0.229 E -131.9 158.6 5.0 0.024 0.205 A:P29965:0.205
 HOH
 3.595
 CA
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 PHE A:109 A:229 46.0 0.219 E -154.0 154.1 46.0 0.219 0.0 LKJ
HOH
 3.954
6.939
 CA
O
 C50
O
PHE B:109 B:229 44.0 0.21 E -132.0 145.0 1.0 0.005 0.205 A:P29965:0.205
 LKJ
HOH
 9.889
6.391
 N
CZ
 C34
O
PHE C:109 C:229 44.0 0.21 E -142.2 147.0 3.0 0.014 0.196 B:P29965:0.195
 LKJ
HOH
 9.213
7.289
 CE2
CZ
 C28
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 PHE A:229 A:229 45.0 0.214 E -137.3 145.5