Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741549 . C A CCDS14659.1:NM_000074.2:c.761aCg>aAg_NP_000065.1:p.254T>K Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 THR A:139 A:254 4.0 0.029 S -133.7 123.3 4.0 0.029 0.0 HOH
 1.986
 H
 O
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 THR A:139 A:254 6.0 0.043 -108.4 122.0 6.0 0.043 0.0
THR B:139 B:254 5.0 0.036 S -108.8 120.1 5.0 0.036 0.0
THR C:139 C:254 6.0 0.043 -109.0 119.4 6.0 0.043 0.0
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 THR A:139 A:254 4.0 0.029 S -142.7 126.4 4.0 0.029 0.0 HOH
 2.886
 O
 O
THR B:139 B:254 4.0 0.029 S -136.8 128.5 4.0 0.029 0.0 HOH
 2.846
 N
 O
THR C:139 C:254 4.0 0.029 S -140.0 127.3 4.0 0.029 0.0 HOH
 2.864
 O
 O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 THR A:139 A:254 4.0 0.029 S -137.6 126.0 4.0 0.029 0.0 HOH
 2.828
 N
 O
THR B:139 B:254 4.0 0.029 S -137.2 124.5 4.0 0.029 0.0 HOH
 2.896
 N
 O
THR C:139 C:254 5.0 0.036 S -134.4 125.5 5.0 0.036 0.0 HOH
 2.884
 O
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 THR A:142 A:254 3.0 0.021 S -125.8 111.8 3.0 0.021 0.0
THR B:142 B:254 2.0 0.014 S -120.6 115.5 2.0 0.014 0.0
THR C:142 C:254 3.0 0.021 S -124.5 115.3 3.0 0.021 0.0
THR D:142 D:254 3.0 0.021 S -122.8 117.4 NA NA NA
THR E:142 E:254 3.0 0.021 S -126.8 112.1 NA NA NA
THR F:142 F:254 4.0 0.029 S -127.9 116.2 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 THR A:135 A:254 4.0 0.029 S -138.6 119.6 4.0 0.029 0.0 HOH
 2.607
 N
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 THR A:134 A:254 2.0 0.014 S -133.3 129.2 2.0 0.014 0.0 HOH
 2.695
 O
 O
THR B:134 B:254 4.0 0.029 S -132.4 126.4 4.0 0.029 0.0 LKJ
HOH
 9.095
2.563
 C
N
 C27
O
THR C:134 C:254 1.0 0.007 S -127.7 120.6 1.0 0.007 0.0 LKJ
HOH
 8.493
5.722
 C
O
 O6
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 THR A:254 A:254 1.0 0.007 S -132.0 120.9