Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741561 . T A CCDS14659.1:NM_000074.2:c.773tTa>tAa_NP_000065.1:p.258L>* Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 LEU A:143 A:258 1.0 0.006 E -164.6 161.5 0.0 0.0 0.006 A:P29965:0.006
 HOH
 5.897
 CD1
 H2
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 LEU A:143 A:258 1.0 0.006 E -150.8 152.6 0.0 0.0 0.006 B:P29965:0.006
LEU B:143 B:258 2.0 0.012 E -151.3 148.9 1.0 0.006 0.006 C:P29965:0.006
LEU C:143 C:258 1.0 0.006 E -151.7 146.9 0.0 0.0 0.006 A:P29965:0.006
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 LEU A:143 A:258 2.0 0.012 E -161.7 162.0 0.0 0.0 0.012 B:P29965:0.012
 TRS
HOH
 8.685
6.203
 C
CD1
 O3
O
LEU B:143 B:258 1.0 0.006 E -159.1 161.4 0.0 0.0 0.006 C:P29965:0.006
 TRS
HOH
 8.567
6.896
 C
CD1
 O2
O
LEU C:143 C:258 2.0 0.012 E -162.0 159.7 0.0 0.0 0.012 A:P29965:0.012
 TRS
HOH
 9.070
6.977
 C
CD1
 C1
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 LEU A:143 A:258 2.0 0.012 E -161.7 162.4 0.0 0.0 0.012 B:P29965:0.012
 TRS
HOH
 8.632
6.393
 C
CD1
 O1
O
LEU B:143 B:258 1.0 0.006 E -159.3 165.8 0.0 0.0 0.006 C:P29965:0.006
 TRS
HOH
 8.832
6.549
 C
CD1
 O3
O
LEU C:143 C:258 2.0 0.012 E -160.3 159.8 0.0 0.0 0.012 A:P29965:0.012
 TRS
HOH
 8.682
6.666
 C
CD1
 O2
O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 LEU A:146 A:258 2.0 0.012 E -152.8 166.7 0.0 0.0 0.012 B:P29965:0.012
LEU B:146 B:258 2.0 0.012 E -157.9 161.7 1.0 0.006 0.006 C:P29965:0.006
LEU C:146 C:258 3.0 0.018 E -160.5 172.0 0.0 0.0 0.018 A:P29965:0.018
LEU D:146 D:258 2.0 0.012 E -155.8 163.3 NA NA NA
LEU E:146 E:258 2.0 0.012 E -159.4 173.0 NA NA NA
LEU F:146 F:258 3.0 0.018 E -157.1 164.9 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 LEU A:139 A:258 1.0 0.006 E -174.4 150.7 0.0 0.0 0.006 A:P29965:0.006
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 LEU A:138 A:258 3.0 0.018 E -150.7 170.8 0.0 0.0 0.018 B:P29965:0.018
 LKJ
HOH
 7.860
8.613
 C
N
 C35
O
LEU B:138 B:258 1.0 0.006 E -151.6 163.3 0.0 0.0 0.006 C:P29965:0.006
 LKJ
HOH
 8.597
8.355
 C
N
 C41
O
LEU C:138 C:258 0.0 0.0 E -154.2 169.2 0.0 0.0 0.0 LKJ
HOH
 5.640
2.940
 O
O
 C4
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 LEU A:258 A:258 1.0 0.006 E -152.2 156.9