Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 53459295 . T A CCDS14354.1:NM_004493.2:c.257gAt>gTt_NP_004484.1:p.86D>V Homo sapiens hydroxysteroid 17-beta dehydrogenase 10 (HSD17B10), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
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label_comp_id: 
auth_asym_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2o23 1 Q6IBS9 100.0 0.0 X-RAY
 2006-12-12 ASP A:88 A:86 14.0 0.093 -106.5 -30.3 14.0 0.093 0.0 HOH
 2.631
 OD1
 O
ASP B:88 B:86 22.0 0.147 -102.0 -29.7 22.0 0.147 0.0 HOH
 2.703
 OD1
 O
1so8 1 Q99714 100.0 0.0 X-RAY
 2004-05-11 ASP A:86 A:86 17.0 0.113 -103.1 -33.3 17.0 0.113 0.0 HOH
 4.230
 OD1
 O
7onu 1 Q99714 100.0 0.0 EM
 2021-08-11 ASP A:86 A:86 17.0 0.113 -112.6 -32.2 17.0 0.113 0.0
ASP B:86 B:86 21.0 0.14 -108.1 -41.9 21.0 0.14 0.0
ASP C:86 C:86 11.0 0.073 -112.6 -33.3 11.0 0.073 0.0
ASP D:86 D:86 27.0 0.18 -111.5 -31.9 27.0 0.18 0.0
1u7t 1 Q99714 99.62 0.0 X-RAY
 2004-10-05 ASP A:86 A:86 19.0 0.127 -110.4 -28.6 19.0 0.127 0.0 HOH
 5.437
 N
 O
ASP B:86 B:86 18.0 0.12 -103.4 -28.0 18.0 0.12 0.0 HOH
 5.489
 N
 O
ASP C:86 C:86 16.0 0.107 -97.8 -28.8 16.0 0.107 0.0 HOH
 5.351
 N
 O
ASP D:86 D:86 16.0 0.107 -101.2 -29.1 16.0 0.107 0.0 HOH
 2.765
 OD1
 O
1e3s 1 O70351 87.74 2e-167 X-RAY
 2001-05-25 ASP A:86 A:86 21.0 0.14 -108.2 -28.9 21.0 0.14 0.0 HOH
 2.873
 OD1
 O
ASP B:86 B:86 19.0 0.127 -104.4 -36.1 19.0 0.127 0.0 HOH
 2.797
 OD1
 O
ASP C:86 C:86 21.0 0.14 -103.4 -31.9 21.0 0.14 0.0 HOH
 2.719
 OD1
 O
ASP D:86 D:86 13.0 0.087 -104.7 -33.4 13.0 0.087 0.0 HOH
 2.691
 OD1
 O
1e3w 2 O70351 87.74 2e-167 X-RAY
 2001-05-25 ASP B:86 B:86 19.0 0.127 -110.3 -30.0 19.0 0.127 0.0 HOH
 2.687
 OD1
 O
ASP C:86 C:86 20.0 0.133 -108.8 -29.7 20.0 0.133 0.0 HOH
 2.693
 OD1
 O
ASP D:86 D:86 11.0 0.073 -105.9 -31.6 11.0 0.073 0.0 HOH
 2.710
 OD1
 O
1e3w 1 O70351 87.36 1e-166 X-RAY
 2001-05-25 ASP A:86 A:86 22.0 0.147 -107.5 -29.8 22.0 0.147 0.0 HOH
 2.613
 OD1
 O
1e6w 1 O70351 87.69 2e-166 X-RAY
 2001-05-25 ASP A:85 A:86 23.0 0.153 -98.9 -33.0 23.0 0.153 0.0 HOH
 2.665
 OD1
 O
ASP B:85 B:86 20.0 0.133 -99.8 -32.1 20.0 0.133 0.0 HOH
 2.753
 OD1
 O
ASP C:85 C:86 20.0 0.133 -103.2 -25.1 20.0 0.133 0.0 HOH
 2.670
 OD1
 O
ASP D:85 D:86 13.0 0.087 -108.5 -29.3 13.0 0.087 0.0 HOH
 2.684
 OD1
 O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q99714-f1 1 Q99714 100.0 0.0 ASP A:86 A:86 3.0 0.02 -111.8 -27.5