Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 65253538 . G A CCDS14383.1:NM_007268.2:c.190Cct>Tct_NP_009199.1:p.64P>S Homo sapiens V-set and immunoglobulin domain containing 4 (VSIG4), transcript variant 1, mRNA.
pdb_id: 
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alphafold_id: 
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PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
5imk 2 Q9Y279 99.53 1e-158 X-RAY
 2017-01-11 PRO B:52 A:45 66.0 0.455 E -82.6 151.4 26.0 0.179 0.276 A:None:0.276
 HOH
 2.483
 HD2
 O
5iml 1 Q9Y279 99.53 1e-158 X-RAY
 2017-01-11 PRO A:52 A:45 57.0 0.393 E -74.3 144.9 17.0 0.117 0.276 B:None:0.276
 HOH
 2.420
 HG2
 O
2icc 1 Q9Y279 100.0 2e-83 X-RAY
 2006-11-07 PRO A:46 A:45 61.0 0.421 -67.3 142.8 61.0 0.421 0.0 HOH
 2.779
 O
 O
2ice 4 Q9Y279 100.0 2e-83 X-RAY
 2006-11-07 PRO D:46 S:45 63.0 0.434 -80.9 158.2 54.0 0.372 0.062 B:P01024:0.062
PRO H:46 T:45 61.0 0.421 -99.8 163.0 NA NA NA
2icf 3 Q9Y279 100.0 2e-83 X-RAY
 2006-11-07 PRO C:46 S:45 68.0 0.469 -90.2 154.6 58.0 0.4 0.069 B:P01024:0.055
A:P01024:0.014

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q9y279-f1 1 Q9Y279 100.0 0.0 PRO A:64 A:64 60.0 0.414 E -73.1 136.6