Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chrX | 133609278 | . | C | A | CCDS14641.1:NM_000194.2:c.202Ctc>Atc_NP_000185.1:p.68L>I | Homo sapiens hypoxanthine phosphoribosyltransferase 1 (HPRT1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1bzy | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
1999-06-22 | LEU | A:67 | A:67 | 44.0 | 0.259 | E | -79.8 | 153.6 | 9.0 | 0.053 | 0.206 |
B:P00492:0.206 |
MG MG IMU POP HOH |
4.229 7.569 5.753 3.795 2.936 |
O O O O O |
MG MG O3' O2 O |
|
LEU | B:67 | B:67 | 47.0 | 0.276 | E | -76.1 | 151.6 | 10.0 | 0.059 | 0.217 |
A:P00492:0.218 |
MG MG IMU POP HOH |
4.346 7.422 5.824 3.823 2.896 |
O O O C O |
MG MG O3' O1 O |
||||||||
LEU | C:67 | C:67 | 46.0 | 0.271 | E | -73.7 | 152.3 | 11.0 | 0.065 | 0.206 |
D:P00492:0.206 |
MG MG IMU POP HOH |
4.234 7.340 5.872 3.542 2.861 |
O C O C O |
MG MG O3' O1 O |
||||||||
LEU | D:67 | D:67 | 47.0 | 0.276 | E | -73.7 | 153.8 | 7.0 | 0.041 | 0.235 |
C:P00492:0.235 |
MG MG IMU POP HOH |
4.227 7.709 5.880 3.760 2.668 |
O C O C O |
MG MG O3' O2 O |
||||||||
1hmp | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
1995-06-03 | LEU | A:67 | A:67 | 39.0 | 0.229 | -93.7 | 67.4 | 18.0 | 0.106 | 0.123 |
B:P00492:0.124 |
5GP HOH |
6.959 4.181 |
C CA |
O2' O |
||
LEU | B:67 | B:67 | 90.0 | 0.529 | T | -72.2 | 12.1 | 63.0 | 0.371 | 0.158 |
A:P00492:0.159 |
5GP HOH |
7.904 9.378 |
C O |
O2' O |
||||||||
1z7g | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2005-08-02 | LEU | A:67 | A:67 | 40.0 | 0.235 | -67.1 | 127.1 | 17.0 | 0.1 | 0.135 |
B:P00492:0.135 |
HOH |
3.929 |
C |
O |
||
LEU | B:67 | B:67 | 43.0 | 0.253 | -66.2 | 121.2 | 17.0 | 0.1 | 0.153 |
A:P00492:0.153 |
HOH |
2.836 |
O |
O |
|||||||||
LEU | C:67 | C:67 | 83.0 | 0.488 | -65.9 | 122.5 | NA | NA | NA | ||||||||||||||
LEU | D:67 | D:67 | 44.0 | 0.259 | -66.8 | 115.7 | NA | NA | NA | ||||||||||||||
3gep | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | LEU | A:67 | A:67 | 32.0 | 0.188 | E | -93.8 | 114.8 | 0.0 | 0.0 | 0.188 |
B:P00492:0.188 |
24H HOH |
8.461 4.041 |
C C |
OAD O |
|
LEU | B:67 | B:67 | 41.0 | 0.241 | E | -74.2 | 163.6 | 5.0 | 0.029 | 0.212 |
A:P00492:0.212 |
24H HOH |
9.223 4.805 |
O O |
OAD O |
||||||||
3ggc | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | LEU | A:67 | A:67 | 36.0 | 0.212 | E | -95.4 | 100.1 | 0.0 | 0.0 | 0.212 |
B:P00492:0.212 |
HOH |
3.670 |
C |
O |
|
LEU | B:67 | B:67 | 44.0 | 0.259 | E | -75.8 | 166.8 | 5.0 | 0.029 | 0.23 |
A:P00492:0.229 |
HOH |
3.476 |
CD1 |
O |
||||||||
3ggj | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | LEU | A:67 | A:67 | 34.0 | 0.2 | E | -105.4 | 96.8 | 0.0 | 0.0 | 0.2 |
B:P00492:0.2 |
HOH |
3.498 |
C |
O |
|
LEU | B:67 | B:67 | 42.0 | 0.247 | E | -80.2 | 171.6 | 4.0 | 0.024 | 0.223 |
A:P00492:0.224 |
HOH |
3.534 |
CD1 |
O |
||||||||
4rab | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | LEU | A:67 | A:67 | 69.0 | 0.406 | E | -71.9 | 154.6 | 25.0 | 0.147 | 0.259 |
C:P00492:0.259 |
3L3 MG PO4 HOH |
7.167 6.935 3.578 2.799 |
O O C O |
CAL MG O4 O |
|
LEU | B:67 | B:67 | 61.0 | 0.359 | T | -71.5 | 155.3 | 19.0 | 0.112 | 0.247 |
D:P00492:0.247 |
3L3 MG PO4 HOH |
6.909 6.069 3.796 3.505 |
O O C O |
OAD MG O4 O |
||||||||
LEU | C:67 | C:67 | 46.0 | 0.271 | E | -65.0 | 153.3 | 14.0 | 0.082 | 0.189 |
A:P00492:0.188 |
3L3 MG MG PO4 HOH |
7.625 6.353 7.733 3.987 4.281 |
O O O O O |
OAH MG MG O2 O |
||||||||
LEU | D:67 | D:67 | 60.0 | 0.353 | E | -68.1 | 153.2 | 19.0 | 0.112 | 0.241 |
B:P00492:0.241 |
3L3 MG MG PO4 HOH |
7.050 5.407 8.733 3.368 2.963 |
O O O O O |
CAL MG MG O2 O |
||||||||
4rac | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | LEU | A:67 | A:67 | 56.0 | 0.329 | E | -71.2 | 154.9 | 16.0 | 0.094 | 0.235 |
C:P00492:0.235 |
3L4 MG MG HOH |
3.690 7.787 5.288 2.541 |
C O O O |
OAG MG MG O |
|
LEU | B:67 | B:67 | 50.0 | 0.294 | E | -70.0 | 154.7 | 16.0 | 0.094 | 0.2 |
D:P00492:0.2 |
3L4 MG MG HOH |
3.655 7.771 5.469 2.574 |
O O O O |
OAG MG MG O |
||||||||
LEU | C:67 | C:67 | 55.0 | 0.324 | E | -75.9 | 156.2 | 15.0 | 0.088 | 0.236 |
A:P00492:0.235 |
3L4 MG MG HOH |
3.688 5.245 7.894 2.743 |
O O O O |
OAH MG MG O |
||||||||
LEU | D:67 | D:67 | 51.0 | 0.3 | E | -65.7 | 152.2 | 18.0 | 0.106 | 0.194 |
B:P00492:0.194 |
3L4 MG HOH |
3.757 5.407 3.143 |
C O O |
OAG MG O |
||||||||
4rad | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | LEU | A:67 | A:67 | 61.0 | 0.359 | T | -74.3 | 154.4 | 22.0 | 0.129 | 0.23 |
C:P00492:0.229 |
3L5 MG HOH |
3.790 7.521 2.687 |
O O O |
OAF MG O |
|
LEU | B:67 | B:67 | 58.0 | 0.341 | E | -78.2 | 154.5 | 19.0 | 0.112 | 0.229 |
D:P00492:0.229 |
3L5 MG MG HOH |
5.394 8.155 8.097 2.722 |
O O O O |
H3 MG MG O |
||||||||
LEU | C:67 | C:67 | 47.0 | 0.276 | E | -66.9 | 155.7 | 14.0 | 0.082 | 0.194 |
A:P00492:0.194 |
3L5 MG HOH |
3.786 5.522 3.625 |
C O O |
OAF MG O |
||||||||
LEU | D:67 | D:67 | 59.0 | 0.347 | E | -66.5 | 158.1 | 19.0 | 0.112 | 0.235 |
B:P00492:0.235 |
3L5 MG HOH |
3.024 5.136 2.632 |
O O O |
H4 MG O |
||||||||
LEU | E:67 | E:67 | 58.0 | 0.341 | E | -80.8 | 156.5 | NA | NA | NA | |||||||||||||
LEU | F:67 | F:67 | 46.0 | 0.271 | E | -75.7 | 157.1 | NA | NA | NA | |||||||||||||
LEU | G:67 | G:67 | 53.0 | 0.312 | E | -72.2 | 161.4 | NA | NA | NA | |||||||||||||
LEU | H:67 | H:67 | 54.0 | 0.318 | E | -65.6 | 154.6 | NA | NA | NA | |||||||||||||
4ran | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | LEU | A:67 | A:67 | 60.0 | 0.353 | E | -69.8 | 152.7 | 20.0 | 0.118 | 0.235 |
C:P00492:0.235 |
3L6 MG HOH |
7.225 5.268 3.582 |
O O O |
CAI MG O |
|
LEU | B:67 | B:67 | 52.0 | 0.306 | T | -75.1 | 152.5 | 17.0 | 0.1 | 0.206 |
D:P00492:0.206 |
3L6 MG HOH |
7.615 4.779 3.372 |
O O O |
CAI MG O |
||||||||
LEU | C:67 | C:67 | 46.0 | 0.271 | T | -68.6 | 149.0 | 11.0 | 0.065 | 0.206 |
A:P00492:0.206 |
3L6 MG HOH |
5.475 5.785 5.356 |
O O O |
NAA MG O |
||||||||
LEU | D:67 | D:67 | 56.0 | 0.329 | E | -77.6 | 149.8 | 15.0 | 0.088 | 0.241 |
B:P00492:0.241 |
3L6 MG |
5.163 5.645 |
O O |
NAA MG |
||||||||
4rao | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | LEU | A:67 | A:67 | 59.0 | 0.347 | E | -71.6 | 155.5 | 14.0 | 0.082 | 0.265 |
C:P00492:0.265 |
3L7 MG MG HOH |
3.749 5.277 8.128 2.540 |
C O O O |
OAE MG MG O |
|
LEU | B:67 | B:67 | 57.0 | 0.335 | E | -79.6 | 158.9 | 15.0 | 0.088 | 0.247 |
D:P00492:0.247 |
3L7 MG MG HOH |
3.845 5.401 8.087 4.520 |
C O O CD1 |
OAB MG MG O |
||||||||
LEU | C:67 | C:67 | 46.0 | 0.271 | E | -68.8 | 155.7 | 14.0 | 0.082 | 0.189 |
A:P00492:0.188 |
3L7 MG MG HOH |
3.712 5.493 7.986 2.510 |
C O O O |
OAE MG MG O |
||||||||
LEU | D:67 | D:67 | 64.0 | 0.376 | T | -69.9 | 160.0 | 22.0 | 0.129 | 0.247 |
B:P00492:0.247 |
3L7 MG MG HOH |
3.700 5.159 8.015 3.334 |
O O O O |
OAD MG MG O |
||||||||
4raq | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | LEU | A:67 | A:67 | 54.0 | 0.318 | E | -68.7 | 149.6 | 17.0 | 0.1 | 0.218 |
C:P00492:0.218 |
3L8 MG MG HOH |
3.780 7.980 4.983 2.942 |
O O O O |
OAC MG MG O |
|
LEU | B:67 | B:67 | 49.0 | 0.288 | E | -64.1 | 159.3 | 13.0 | 0.076 | 0.212 |
D:P00492:0.212 |
3L8 MG MG HOH |
3.763 8.799 5.475 3.648 |
O O O O |
OAF MG MG O |
||||||||
LEU | C:67 | C:67 | 49.0 | 0.288 | E | -60.3 | 148.5 | 15.0 | 0.088 | 0.2 |
A:P00492:0.2 |
3L8 MG MG HOH |
3.858 9.087 5.683 3.533 |
C O O O |
OAG MG MG O |
||||||||
LEU | D:67 | D:67 | 58.0 | 0.341 | E | -64.9 | 150.7 | 22.0 | 0.129 | 0.212 |
B:P00492:0.212 |
3L8 MG MG HOH |
3.375 5.144 8.166 3.241 |
O O O O |
OAG MG MG O |
||||||||
4ijq | 1 | P00492 | 100.0 | 4e-161 |
X-RAY |
2013-03-27 | LEU | A:73 | A:67 | 55.0 | 0.324 | E | -67.2 | 156.2 | 17.0 | 0.1 | 0.224 |
C:P00492:0.224 |
SV2 SO4 MG MG HOH |
7.586 3.784 5.226 7.843 3.500 |
O O O O O |
CAL O3 MG MG O |
|
LEU | B:73 | B:67 | 57.0 | 0.335 | E | -72.4 | 158.9 | 19.0 | 0.112 | 0.223 |
D:P00492:0.224 |
SV2 MG SO4 MG HOH |
7.169 5.407 3.711 7.773 2.628 |
O O O O O |
CAL MG O3 MG O |
||||||||
LEU | C:73 | C:67 | 52.0 | 0.306 | T | -68.2 | 160.0 | 18.0 | 0.106 | 0.2 |
A:P00492:0.2 |
SV2 MG MG SO4 HOH |
7.136 5.467 8.683 3.711 3.596 |
O O C O O |
CAL MG MG O2 O |
||||||||
LEU | D:73 | D:67 | 57.0 | 0.335 | T | -70.4 | 157.5 | 20.0 | 0.118 | 0.217 |
B:P00492:0.218 |
MG SV2 MG SO4 HOH |
7.967 7.313 5.359 3.839 2.868 |
O O O O O |
MG CAL MG O1 O |
||||||||
4kn6 | 1 | P00492 | 100.0 | 1e-160 |
X-RAY |
2013-08-14 | LEU | A:66 | A:67 | 47.0 | 0.276 | E | -122.3 | 117.6 | 47.0 | 0.276 | 0.0 |
1RP HOH |
8.505 4.759 |
C HA |
O2' O |
||
6bnj | 1 | P00492 | 99.08 | 6e-160 |
X-RAY |
2017-12-06 | LEU | A:68 | A:67 | 55.0 | 0.324 | E | -77.0 | 155.3 | 13.0 | 0.076 | 0.248 |
C:P00492:0.247 |
WPG MG MG HOH |
3.810 5.710 7.883 2.932 |
C O O O |
OAH MG MG O |
|
LEU | B:68 | B:67 | 60.0 | 0.353 | E | -73.9 | 157.0 | 18.0 | 0.106 | 0.247 |
D:P00492:0.247 |
WPG MG MG HOH |
3.843 5.249 8.072 2.831 |
O O O O |
OAG MG MG O |
||||||||
LEU | C:68 | C:67 | 51.0 | 0.3 | T | -64.9 | 158.0 | 19.0 | 0.112 | 0.188 |
A:P00492:0.188 |
WPG MG MG HOH |
3.674 5.448 7.700 2.845 |
C O O O |
OAG MG MG O |
||||||||
LEU | D:68 | D:67 | 60.0 | 0.353 | E | -79.2 | 157.8 | 20.0 | 0.118 | 0.235 |
B:P00492:0.235 |
WPG MG MG HOH |
3.851 5.676 7.961 2.928 |
O O O O |
OAG MG MG O |
||||||||
5hia | 1 | P00492 | 99.08 | 8e-160 |
X-RAY |
2017-01-18 | LEU | A:74 | A:67 | 56.0 | 0.329 | E | -80.9 | 154.3 | 14.0 | 0.082 | 0.247 |
C:P00492:0.247 |
YPG MG MG HOH |
3.804 7.869 5.642 2.924 |
C C O O |
OAG MG MG O |
|
LEU | B:74 | B:67 | 63.0 | 0.371 | T | -71.4 | 157.5 | 22.0 | 0.129 | 0.242 |
D:P00492:0.241 |
YPG MG MG HOH |
3.689 7.695 5.327 2.717 |
O O O O |
OAH MG MG O |
||||||||
LEU | C:74 | C:67 | 56.0 | 0.329 | T | -73.4 | 155.2 | 21.0 | 0.124 | 0.205 |
A:P00492:0.206 |
YPG MG MG HOH |
3.638 7.703 5.446 3.028 |
C O O O |
OAG MG MG O |
||||||||
LEU | D:74 | D:67 | 61.0 | 0.359 | E | -70.3 | 157.7 | 21.0 | 0.124 | 0.235 |
B:P00492:0.235 |
YPG MG MG HOH |
3.800 7.827 5.380 2.754 |
C O O O |
OAG MG MG O |
||||||||
5brn | 1 | P00492 | 98.62 | 3e-159 |
X-RAY |
2015-10-14 | LEU | A:68 | A:67 | 62.0 | 0.365 | T | -77.0 | 154.4 | 18.0 | 0.106 | 0.259 |
D:P00492:0.259 |
MG 4X2 HOH |
5.330 6.845 3.288 |
O O O |
MG O10 O |
|
LEU | B:68 | B:67 | 60.0 | 0.353 | E | -77.3 | 152.1 | 17.0 | 0.1 | 0.253 |
C:P00492:0.253 |
MG 4X2 HOH |
5.416 6.730 3.748 |
O O O |
MG O10 O |
||||||||
LEU | C:68 | C:67 | 50.0 | 0.294 | T | -69.8 | 154.3 | 14.0 | 0.082 | 0.212 |
B:P00492:0.212 |
MG 4X2 HOH |
5.566 6.692 2.767 |
O O O |
MG O10 O |
||||||||
LEU | D:68 | D:67 | 71.0 | 0.418 | E | -65.8 | 153.1 | 29.0 | 0.171 | 0.247 |
A:P00492:0.247 |
MG 4X2 HOH |
5.334 6.740 3.522 |
O O O |
MG O10 O |
||||||||
5bsk | 1 | P00492 | 98.62 | 3e-159 |
X-RAY |
2015-09-23 | LEU | A:68 | A:67 | 80.0 | 0.471 | S | -113.2 | 145.0 | 47.0 | 0.276 | 0.195 |
C:P00492:0.194 |
4X7 MG HOH |
7.564 5.812 4.881 |
C C C |
OAD MG O |
|
LEU | B:68 | B:67 | 76.0 | 0.447 | S | -108.7 | 150.9 | 42.0 | 0.247 | 0.2 |
D:P00492:0.2 |
4X7 MG HOH |
8.260 5.586 4.016 |
C C N |
OAD MG O |
||||||||
LEU | C:68 | C:67 | 77.0 | 0.453 | E | -102.2 | 145.4 | 41.0 | 0.241 | 0.212 |
A:P00492:0.212 |
4X7 MG HOH |
8.532 6.074 4.444 |
C C C |
OAD MG O |
||||||||
LEU | D:68 | D:67 | 71.0 | 0.418 | S | -93.4 | 147.3 | 38.0 | 0.224 | 0.194 |
B:P00492:0.194 |
4X7 MG HOH |
7.812 6.368 4.193 |
C C O |
OAD MG O |
||||||||
5w8v | 1 | P00492 | 100.0 | 7e-159 |
X-RAY |
2017-08-30 | LEU | A:65 | A:67 | 68.0 | 0.4 | E | -68.2 | 154.7 | 26.0 | 0.153 | 0.247 |
C:P00492:0.247 |
9YP MG HOH |
5.097 5.555 3.373 |
O O O |
OAF MG O |
|
LEU | B:65 | B:67 | 56.0 | 0.329 | E | -66.3 | 151.2 | 19.0 | 0.112 | 0.217 |
D:P00492:0.218 |
9YP MG HOH |
4.992 5.794 3.096 |
O O O |
OAE MG O |
||||||||
LEU | C:65 | C:67 | 52.0 | 0.306 | T | -60.8 | 149.5 | 17.0 | 0.1 | 0.206 |
A:P00492:0.206 |
9YP MG HOH |
4.884 5.973 2.965 |
O O O |
OAC MG O |
||||||||
LEU | D:65 | D:67 | 54.0 | 0.318 | T | -61.6 | 150.6 | 18.0 | 0.106 | 0.212 |
B:P00492:0.212 |
9YP MG HOH |
4.981 5.776 3.750 |
O O O |
OAC MG O |
||||||||
1d6n | 1 | P00492 | 99.07 | 6e-157 |
X-RAY |
1999-12-30 | LEU | A:64 | A:67 | 47.0 | 0.276 | -160.0 | 175.7 | 18.0 | 0.106 | 0.17 |
B:P00492:0.171 |
MG PRP HOH |
5.714 2.460 3.738 |
N C N |
MG O3B O |
||
LEU | B:64 | B:67 | 80.0 | 0.471 | -98.3 | -151.1 | 23.0 | 0.135 | 0.336 |
A:P00492:0.335 |
MG PPO PRP HOH |
4.128 9.283 4.450 2.809 |
O O O O |
MG C2 O2 O |
|||||||||
2vfa | 1 | P20035,P00492 | 80.48 | 3e-122 |
X-RAY |
2008-06-17 | LEU | A:76 | A:76 | 82.0 | 0.482 | -78.0 | 107.8 | 82.0 | 0.482 | 0.0 |
5GP SO4 HOH |
7.298 9.023 4.723 |
O O C |
O3' O1 O |
|||
LEU | B:76 | B:76 | 40.0 | 0.235 | -66.4 | 92.8 | 40.0 | 0.235 | 0.0 |
5GP SO4 HOH |
6.055 9.287 4.428 |
O O O |
O3' O4 O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p00492-f1 | 1 | P00492 | 100.0 | 2e-162 | LEU | A:68 | A:68 | 60.0 | 0.353 | E | -91.2 | 151.1 |