Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chrX | 133609288 | . | G | A | CCDS14641.1:NM_000194.2:c.212gGc>gAc_NP_000185.1:p.71G>D | Homo sapiens hypoxanthine phosphoribosyltransferase 1 (HPRT1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1bzy | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
1999-06-22 | GLY | A:70 | A:70 | 0.0 | 0.0 | T | -85.7 | 10.8 | 0.0 | 0.0 | 0.0 |
MG MG IMU POP HOH |
5.269 8.115 5.638 5.056 3.335 |
N N N N N |
MG MG O2' O2 O |
||
GLY | B:70 | B:70 | 0.0 | 0.0 | T | -89.4 | -1.4 | 0.0 | 0.0 | 0.0 |
MG MG IMU POP HOH |
5.435 7.983 5.600 5.061 3.559 |
N N N N N |
MG MG O2' O2 O |
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GLY | C:70 | C:70 | 0.0 | 0.0 | T | -86.9 | 2.0 | 0.0 | 0.0 | 0.0 |
MG MG IMU POP HOH |
5.159 7.858 5.676 5.170 3.226 |
N N N N N |
MG MG O2' O2 O |
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GLY | D:70 | D:70 | 0.0 | 0.0 | T | -89.3 | -0.5 | 0.0 | 0.0 | 0.0 |
MG MG IMU POP HOH |
5.425 8.209 5.683 5.022 3.399 |
N N N N N |
MG MG O2' O2 O |
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1hmp | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
1995-06-03 | GLY | A:70 | A:70 | 17.0 | 0.227 | -170.1 | 178.5 | 14.0 | 0.187 | 0.04 |
B:P00492:0.04 |
5GP HOH |
6.929 2.696 |
N O |
O2' O |
||
GLY | B:70 | B:70 | 8.0 | 0.107 | -131.4 | 56.8 | 8.0 | 0.107 | 0.0 |
5GP HOH |
7.789 7.547 |
N CA |
O2' O |
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1z7g | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2005-08-02 | GLY | A:70 | A:70 | 5.0 | 0.067 | -108.9 | 161.8 | 2.0 | 0.027 | 0.04 |
B:P00492:0.04 |
HOH |
2.488 |
O |
O |
||
GLY | B:70 | B:70 | 6.0 | 0.08 | -104.2 | 170.6 | 5.0 | 0.067 | 0.013 |
A:P00492:0.013 |
HOH |
2.708 |
O |
O |
|||||||||
GLY | C:70 | C:70 | 5.0 | 0.067 | -110.3 | 162.3 | NA | NA | NA | ||||||||||||||
GLY | D:70 | D:70 | 5.0 | 0.067 | -104.1 | 167.0 | NA | NA | NA | ||||||||||||||
3gep | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | GLY | A:70 | A:70 | 22.0 | 0.293 | -159.2 | -173.1 | 19.0 | 0.253 | 0.04 |
B:P00492:0.04 |
24H HOH |
9.255 2.594 |
N O |
OAD O |
||
GLY | B:70 | B:70 | 5.0 | 0.067 | T | -115.4 | 13.2 | 5.0 | 0.067 | 0.0 |
24H HOH |
9.350 3.155 |
N CA |
OAD O |
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3ggc | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | GLY | A:70 | A:70 | 21.0 | 0.28 | -156.6 | 175.8 | 15.0 | 0.2 | 0.08 |
B:P00492:0.08 |
HOH |
2.560 |
O |
O |
||
GLY | B:70 | B:70 | 3.0 | 0.04 | T | -80.0 | 8.7 | 3.0 | 0.04 | 0.0 |
H26 HOH |
9.705 3.319 |
N N |
CAG O |
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3ggj | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | GLY | A:70 | A:70 | 22.0 | 0.293 | -152.3 | 177.0 | 14.0 | 0.187 | 0.106 |
B:P00492:0.107 |
25H HOH |
9.861 2.480 |
N O |
N2 O |
||
GLY | B:70 | B:70 | 3.0 | 0.04 | T | -73.0 | 3.6 | 3.0 | 0.04 | 0.0 |
25H HOH |
9.868 3.397 |
N CA |
CAG O |
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4rab | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | GLY | A:70 | A:70 | 0.0 | 0.0 | T | -81.3 | -10.6 | 0.0 | 0.0 | 0.0 |
3L3 MG PO4 HOH |
8.835 6.193 4.911 3.491 |
N N N C |
CAL MG O1 O |
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GLY | B:70 | B:70 | 0.0 | 0.0 | T | -81.9 | -12.8 | 0.0 | 0.0 | 0.0 |
3L3 MG PO4 HOH |
8.924 5.762 4.782 3.569 |
N N N C |
CAL MG O4 O |
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GLY | C:70 | C:70 | 0.0 | 0.0 | T | -81.3 | -7.2 | 0.0 | 0.0 | 0.0 |
3L3 MG MG PO4 HOH |
8.878 5.807 8.730 5.123 3.563 |
N N N N C |
CAJ MG MG O2 O |
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GLY | D:70 | D:70 | 0.0 | 0.0 | T | -83.9 | -7.9 | 0.0 | 0.0 | 0.0 |
3L3 MG MG PO4 HOH |
8.786 5.082 9.452 5.096 3.655 |
N N N N C |
CAL MG MG O2 O |
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4rac | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | GLY | A:70 | A:70 | 0.0 | 0.0 | T | -80.5 | -11.1 | 0.0 | 0.0 | 0.0 |
3L4 MG MG HOH |
4.845 8.750 5.058 3.505 |
N N N N |
OAD MG MG O |
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GLY | B:70 | B:70 | 0.0 | 0.0 | T | -77.9 | -12.5 | 0.0 | 0.0 | 0.0 |
3L4 MG MG HOH |
4.647 8.741 5.113 3.362 |
N N N N |
OAD MG MG O |
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GLY | C:70 | C:70 | 0.0 | 0.0 | T | -71.5 | -12.1 | 0.0 | 0.0 | 0.0 |
3L4 MG MG HOH |
4.618 5.025 8.843 3.333 |
N N N N |
OAG MG MG O |
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GLY | D:70 | D:70 | 0.0 | 0.0 | T | -76.7 | -7.8 | 0.0 | 0.0 | 0.0 |
3L4 MG HOH |
4.822 5.180 3.655 |
N N N |
OAH MG O |
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4rad | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | GLY | A:70 | A:70 | 0.0 | 0.0 | T | -84.9 | -2.1 | 0.0 | 0.0 | 0.0 |
3L5 MG HOH |
4.711 7.053 3.242 |
H HA3 HA2 |
OAF MG O |
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GLY | B:70 | B:70 | 0.0 | 0.0 | T | -84.7 | -3.8 | 0.0 | 0.0 | 0.0 |
3L5 MG MG HOH |
6.531 7.645 8.758 3.425 |
H HA3 H HA2 |
H8 MG MG O |
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GLY | C:70 | C:70 | 0.0 | 0.0 | T | -80.2 | -4.7 | 0.0 | 0.0 | 0.0 |
3L5 MG HOH |
4.445 5.019 2.928 |
H H H |
OAF MG O |
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GLY | D:70 | D:70 | 0.0 | 0.0 | T | -82.2 | -9.3 | 0.0 | 0.0 | 0.0 |
3L5 MG HOH |
3.933 5.032 2.893 |
H H H |
H3 MG O |
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GLY | E:70 | E:70 | 0.0 | 0.0 | T | -85.4 | -4.5 | NA | NA | NA | |||||||||||||
GLY | F:70 | F:70 | 0.0 | 0.0 | T | -84.5 | -1.7 | NA | NA | NA | |||||||||||||
GLY | G:70 | G:70 | 0.0 | 0.0 | T | -89.7 | -0.9 | NA | NA | NA | |||||||||||||
GLY | H:70 | H:70 | 0.0 | 0.0 | T | -85.2 | -4.8 | NA | NA | NA | |||||||||||||
4ran | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | GLY | A:70 | A:70 | 0.0 | 0.0 | T | -87.8 | -4.8 | 0.0 | 0.0 | 0.0 |
3L6 MG HOH |
9.405 5.782 4.096 |
N N N |
CAJ MG O |
||
GLY | B:70 | B:70 | 0.0 | 0.0 | T | -92.2 | -1.4 | 0.0 | 0.0 | 0.0 |
3L6 MG HOH |
9.120 5.319 3.479 |
N N N |
N2 MG O |
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GLY | C:70 | C:70 | 0.0 | 0.0 | T | -93.7 | 2.2 | 0.0 | 0.0 | 0.0 |
3L6 MG HOH |
8.831 6.110 5.294 |
N N N |
NAA MG O |
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GLY | D:70 | D:70 | 0.0 | 0.0 | T | -90.7 | -0.9 | 0.0 | 0.0 | 0.0 |
3L6 MG |
8.268 5.524 |
N N |
NAA MG |
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4rao | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | GLY | A:70 | A:70 | 0.0 | 0.0 | T | -77.7 | -7.0 | 0.0 | 0.0 | 0.0 |
3L7 MG MG HOH |
4.682 5.203 8.904 3.619 |
N N N N |
OAE MG MG O |
||
GLY | B:70 | B:70 | 0.0 | 0.0 | T | -81.8 | -4.6 | 0.0 | 0.0 | 0.0 |
3L7 MG MG HOH |
5.158 5.224 9.018 3.711 |
N N N C |
OAD MG MG O |
|||||||||
GLY | C:70 | C:70 | 0.0 | 0.0 | T | -73.9 | -11.3 | 0.0 | 0.0 | 0.0 |
3L7 MG MG HOH |
4.712 5.176 8.489 3.495 |
N N N N |
OAD MG MG O |
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GLY | D:70 | D:70 | 0.0 | 0.0 | T | -73.5 | -9.9 | 0.0 | 0.0 | 0.0 |
3L7 MG MG HOH |
4.612 5.118 8.714 3.623 |
N N N N |
OAB MG MG O |
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4raq | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | GLY | A:70 | A:70 | 0.0 | 0.0 | H | -78.6 | -1.8 | 0.0 | 0.0 | 0.0 |
3L8 MG MG HOH |
4.702 9.139 5.011 2.993 |
N N N N |
OAC MG MG O |
||
GLY | B:70 | B:70 | 0.0 | 0.0 | T | -82.8 | -19.3 | 0.0 | 0.0 | 0.0 |
3L8 MG MG HOH |
4.770 9.818 5.292 3.401 |
N N N N |
OAC MG MG O |
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GLY | C:70 | C:70 | 0.0 | 0.0 | T | -79.8 | -12.8 | 0.0 | 0.0 | 0.0 |
3L8 MG HOH |
5.311 5.894 4.069 |
N N N |
OAC MG O |
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GLY | D:70 | D:70 | 0.0 | 0.0 | T | -85.1 | -7.2 | 0.0 | 0.0 | 0.0 |
3L8 MG MG HOH |
5.110 5.245 8.944 3.253 |
N N N C |
OAC MG MG O |
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4ijq | 1 | P00492 | 100.0 | 4e-161 |
X-RAY |
2013-03-27 | GLY | A:76 | A:70 | 0.0 | 0.0 | T | -81.9 | -4.0 | 0.0 | 0.0 | 0.0 |
SV2 SO4 MG MG HOH |
8.755 4.848 4.967 8.730 3.517 |
N N N N N |
CAJ O1 MG MG O |
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GLY | B:76 | B:70 | 0.0 | 0.0 | T | -82.5 | -6.6 | 0.0 | 0.0 | 0.0 |
SV2 MG SO4 MG HOH |
8.965 5.163 4.664 8.676 3.554 |
N N N N N |
CAJ MG O4 MG O |
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GLY | C:76 | C:70 | 0.0 | 0.0 | T | -79.1 | -9.2 | 0.0 | 0.0 | 0.0 |
SV2 MG SO4 HOH |
8.799 5.171 4.649 3.677 |
N N N N |
OAR MG O4 O |
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GLY | D:76 | D:70 | 0.0 | 0.0 | T | -82.2 | -1.2 | 0.0 | 0.0 | 0.0 |
MG SV2 MG SO4 HOH |
8.800 8.909 5.152 4.705 3.488 |
N N N N N |
MG CAJ MG O1 O |
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4kn6 | 1 | P00492 | 100.0 | 1e-160 |
X-RAY |
2013-08-14 | GLY | A:69 | A:70 | 17.0 | 0.227 | -113.8 | 171.5 | 17.0 | 0.227 | 0.0 |
1RP HOH |
7.574 2.979 |
H HA2 |
O2' O |
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6bnj | 1 | P00492 | 99.08 | 6e-160 |
X-RAY |
2017-12-06 | GLY | A:71 | A:70 | 0.0 | 0.0 | T | -77.7 | -3.5 | 0.0 | 0.0 | 0.0 |
WPG MG MG HOH |
4.994 5.155 8.451 3.386 |
N N N N |
OAD MG MG O |
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GLY | B:71 | B:70 | 0.0 | 0.0 | T | -82.4 | -0.0 | 0.0 | 0.0 | 0.0 |
WPG MG MG HOH |
4.999 5.152 8.612 3.809 |
N N N C |
OAG MG MG O |
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GLY | C:71 | C:70 | 0.0 | 0.0 | T | -72.4 | -11.2 | 0.0 | 0.0 | 0.0 |
WPG MG MG HOH |
4.839 4.970 8.362 3.454 |
N N N N |
OAH MG MG O |
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GLY | D:71 | D:70 | 0.0 | 0.0 | T | -72.7 | -6.6 | 0.0 | 0.0 | 0.0 |
WPG MG MG HOH |
4.982 5.045 8.437 3.502 |
N N N N |
OAG MG MG O |
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5hia | 1 | P00492 | 99.08 | 8e-160 |
X-RAY |
2017-01-18 | GLY | A:77 | A:70 | 0.0 | 0.0 | T | -75.5 | -9.7 | 0.0 | 0.0 | 0.0 |
YPG MG MG HOH |
4.921 8.433 4.958 3.507 |
N N N N |
OAH MG MG O |
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GLY | B:77 | B:70 | 0.0 | 0.0 | T | -79.2 | -5.2 | 0.0 | 0.0 | 0.0 |
YPG MG MG HOH |
5.008 8.452 5.039 3.628 |
N N N N |
OAH MG MG O |
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GLY | C:77 | C:70 | 0.0 | 0.0 | T | -75.2 | -6.1 | 0.0 | 0.0 | 0.0 |
YPG MG MG HOH |
4.838 8.332 4.965 3.574 |
N N N N |
OAH MG MG O |
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GLY | D:77 | D:70 | 0.0 | 0.0 | T | -78.1 | -9.0 | 0.0 | 0.0 | 0.0 |
YPG MG MG HOH |
4.929 8.427 4.894 3.604 |
N N N N |
OAH MG MG O |
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5brn | 1 | P00492 | 98.62 | 3e-159 |
X-RAY |
2015-10-14 | GLY | A:71 | A:70 | 0.0 | 0.0 | T | -88.9 | -6.1 | 0.0 | 0.0 | 0.0 |
MG 4X2 HOH |
5.367 7.661 3.707 |
N N C |
MG O10 O |
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GLY | B:71 | B:70 | 0.0 | 0.0 | T | -98.2 | -3.5 | 0.0 | 0.0 | 0.0 |
MG 4X2 HOH |
5.560 7.415 3.459 |
N N CA |
MG O10 O |
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GLY | C:71 | C:70 | 0.0 | 0.0 | T | -101.8 | 2.0 | 0.0 | 0.0 | 0.0 |
MG 4X2 HOH |
5.660 6.953 3.852 |
N N C |
MG O10 O |
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GLY | D:71 | D:70 | 0.0 | 0.0 | T | -82.9 | -6.0 | 0.0 | 0.0 | 0.0 |
MG 4X2 HOH |
5.588 7.313 3.770 |
N N C |
MG O10 O |
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5bsk | 1 | P00492 | 98.62 | 3e-159 |
X-RAY |
2015-09-23 | GLY | A:71 | A:70 | 4.0 | 0.053 | 97.3 | 38.7 | 4.0 | 0.053 | 0.0 |
4X7 MG HOH |
6.364 4.560 4.128 |
N N N |
OAD MG O |
|||
GLY | B:71 | B:70 | 3.0 | 0.04 | 98.3 | 10.0 | 3.0 | 0.04 | 0.0 |
4X7 MG HOH |
7.469 4.791 2.907 |
N N N |
OAD MG O |
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GLY | C:71 | C:70 | 2.0 | 0.027 | 89.3 | 17.7 | 2.0 | 0.027 | 0.0 |
4X7 MG HOH |
7.000 5.075 4.317 |
N N N |
OAD MG O |
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GLY | D:71 | D:70 | 4.0 | 0.053 | 65.6 | 10.6 | 4.0 | 0.053 | 0.0 |
4X7 MG HOH |
6.102 5.528 4.066 |
N N N |
OAD MG O |
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5w8v | 1 | P00492 | 100.0 | 7e-159 |
X-RAY |
2017-08-30 | GLY | A:68 | A:70 | 0.0 | 0.0 | T | -81.7 | -13.6 | 0.0 | 0.0 | 0.0 |
9YP MG HOH |
7.609 5.264 3.672 |
N N C |
OAF MG O |
||
GLY | B:68 | B:70 | 0.0 | 0.0 | T | -86.3 | -9.1 | 0.0 | 0.0 | 0.0 |
9YP MG HOH |
7.584 5.404 3.736 |
N N C |
OAE MG O |
|||||||||
GLY | C:68 | C:70 | 0.0 | 0.0 | T | -89.4 | -5.8 | 0.0 | 0.0 | 0.0 |
9YP MG HOH |
7.033 5.684 3.707 |
N N C |
OAC MG O |
|||||||||
GLY | D:68 | D:70 | 0.0 | 0.0 | T | -85.5 | -8.2 | 0.0 | 0.0 | 0.0 |
9YP MG HOH |
7.540 5.356 3.623 |
N N N |
OAC MG O |
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1d6n | 1 | P00492 | 99.07 | 6e-157 |
X-RAY |
1999-12-30 | GLY | A:67 | A:70 | 9.0 | 0.12 | -114.3 | 127.2 | 7.0 | 0.093 | 0.027 |
B:P00492:0.027 |
MG PPO PRP HOH |
6.546 9.215 2.855 4.780 |
O N N O |
MG N3 O2B O |
||
GLY | B:67 | B:70 | 2.0 | 0.027 | -146.6 | 16.2 | 2.0 | 0.027 | 0.0 |
MG PPO PRP HOH |
6.339 9.580 4.626 4.493 |
CA N N CA |
MG N1 O2B O |
||||||||||
2vfa | 1 | P20035,P00492 | 80.48 | 3e-122 |
X-RAY |
2008-06-17 | GLY | A:79 | A:79 | 2.0 | 0.027 | -132.7 | 67.3 | 2.0 | 0.027 | 0.0 |
5GP HOH |
8.023 5.190 |
N N |
O2' O |
|||
GLY | B:79 | B:79 | 27.0 | 0.36 | -72.2 | 170.7 | 27.0 | 0.36 | 0.0 |
5GP HOH |
7.298 5.748 |
N N |
O2' O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p00492-f1 | 1 | P00492 | 100.0 | 2e-162 | GLY | A:71 | A:71 | 0.0 | 0.0 | T | -67.6 | -12.4 |