Variant
Genome | Chromosome | Position | VCF ID | Ref | Alt | mRNA Change | mRNA Info | GRCh37 | chrX | 133609297 | . | T | A | CCDS14641.1:NM_000194.2:c.221tTc>tAc_NP_000185.1:p.74F>Y | Homo sapiens hypoxanthine phosphoribosyltransferase 1 (HPRT1), mRNA. |
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PDB
Entity | Residue | Monomer | BioUnit | Ligand | View | ||||||||||||||||||
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PDB | Entity | Uniprot | Identity | Evalue | ExpMethod | Date | Name | Label | Auth | ASA | rASA | SS | φ | ψ | ASA | rASA | ΔASA | Interaction | Name | Distance | Atom(p) | Atom(l) | |
1bzy | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
1999-06-22 | PHE | A:73 | A:73 | 3.0 | 0.014 | H | -64.0 | -40.9 | 3.0 | 0.014 | 0.0 |
HOH |
2.979 |
N |
O |
||
PHE | B:73 | B:73 | 1.0 | 0.005 | H | -60.5 | -37.8 | 1.0 | 0.005 | 0.0 |
HOH |
3.106 |
N |
O |
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PHE | C:73 | C:73 | 0.0 | 0.0 | H | -60.6 | -36.3 | 0.0 | 0.0 | 0.0 |
HOH |
3.137 |
N |
O |
|||||||||
PHE | D:73 | D:73 | 2.0 | 0.01 | H | -60.5 | -38.7 | 2.0 | 0.01 | 0.0 |
HOH |
2.926 |
N |
O |
|||||||||
1hmp | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
1995-06-03 | PHE | A:73 | A:73 | 3.0 | 0.014 | H | -62.3 | -46.9 | 3.0 | 0.014 | 0.0 |
5GP HOH |
9.961 2.903 |
CD2 N |
O3' O |
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PHE | B:73 | B:73 | 1.0 | 0.005 | H | -70.4 | -38.6 | 1.0 | 0.005 | 0.0 |
HOH |
7.720 |
N |
O |
|||||||||
1z7g | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2005-08-02 | PHE | A:73 | A:73 | 0.0 | 0.0 | H | -58.7 | -43.9 | 0.0 | 0.0 | 0.0 |
HOH |
3.125 |
N |
O |
||
PHE | B:73 | B:73 | 0.0 | 0.0 | H | -60.7 | -44.6 | 0.0 | 0.0 | 0.0 |
HOH |
3.167 |
N |
O |
|||||||||
PHE | C:73 | C:73 | 0.0 | 0.0 | H | -66.0 | -43.5 | NA | NA | NA | |||||||||||||
PHE | D:73 | D:73 | 0.0 | 0.0 | H | -63.0 | -44.2 | NA | NA | NA | |||||||||||||
3gep | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | PHE | A:73 | A:73 | 2.0 | 0.01 | H | -68.6 | -45.5 | 2.0 | 0.01 | 0.0 |
HOH |
3.363 |
N |
O |
||
PHE | B:73 | B:73 | 0.0 | 0.0 | H | -61.5 | -37.5 | 0.0 | 0.0 | 0.0 |
HOH |
2.956 |
N |
O |
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3ggc | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | PHE | A:73 | A:73 | 4.0 | 0.019 | H | -53.1 | -51.9 | 4.0 | 0.019 | 0.0 |
HOH |
3.865 |
N |
O |
||
PHE | B:73 | B:73 | 0.0 | 0.0 | H | -63.3 | -38.5 | 0.0 | 0.0 | 0.0 |
HOH |
7.826 |
N |
O |
|||||||||
3ggj | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2009-08-18 | PHE | A:73 | A:73 | 4.0 | 0.019 | H | -57.0 | -45.4 | 4.0 | 0.019 | 0.0 |
HOH |
4.129 |
N |
O |
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PHE | B:73 | B:73 | 0.0 | 0.0 | H | -65.3 | -42.7 | 0.0 | 0.0 | 0.0 |
HOH |
6.057 |
CD2 |
O |
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4rab | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | PHE | A:73 | A:73 | 1.0 | 0.005 | H | -57.3 | -42.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.042 2.885 |
CD2 N |
MG O |
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PHE | B:73 | B:73 | 1.0 | 0.005 | H | -57.5 | -36.3 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.235 2.788 |
CD2 N |
MG O |
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PHE | C:73 | C:73 | 2.0 | 0.01 | H | -58.9 | -43.6 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.564 2.762 |
CD2 N |
MG O |
|||||||||
PHE | D:73 | D:73 | 1.0 | 0.005 | H | -58.4 | -38.7 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.436 2.945 |
CD2 N |
MG O |
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4rac | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | PHE | A:73 | A:73 | 1.0 | 0.005 | H | -61.6 | -41.0 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.120 2.876 |
CD2 N |
MG O |
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PHE | B:73 | B:73 | 1.0 | 0.005 | H | -61.4 | -42.2 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.058 2.866 |
CD2 N |
MG O |
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PHE | C:73 | C:73 | 1.0 | 0.005 | H | -52.0 | -44.3 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.233 2.957 |
CD2 N |
MG O |
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PHE | D:73 | D:73 | 1.0 | 0.005 | H | -55.3 | -46.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.494 2.698 |
CD2 N |
MG O |
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4rad | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | PHE | A:73 | A:73 | 1.0 | 0.005 | H | -57.9 | -41.2 | 1.0 | 0.005 | 0.0 |
MG HOH |
8.745 2.031 |
HD2 H |
MG O |
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PHE | B:73 | B:73 | 1.0 | 0.005 | H | -55.8 | -41.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.077 2.230 |
HD2 H |
MG O |
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PHE | C:73 | C:73 | 2.0 | 0.01 | H | -57.6 | -43.6 | 2.0 | 0.01 | 0.0 |
3L5 MG HOH |
9.477 8.702 2.079 |
HB2 HD2 H |
OAF MG O |
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PHE | D:73 | D:73 | 0.0 | 0.0 | H | -59.2 | -42.1 | 0.0 | 0.0 | 0.0 |
3L5 MG HOH |
8.938 8.777 2.083 |
HB3 HD2 H |
H6 MG O |
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PHE | E:73 | E:73 | 1.0 | 0.005 | H | -57.3 | -41.8 | NA | NA | NA | |||||||||||||
PHE | F:73 | F:73 | 1.0 | 0.005 | H | -56.9 | -41.4 | NA | NA | NA | |||||||||||||
PHE | G:73 | G:73 | 1.0 | 0.005 | H | -55.7 | -44.7 | NA | NA | NA | |||||||||||||
PHE | H:73 | H:73 | 1.0 | 0.005 | H | -59.3 | -41.6 | NA | NA | NA | |||||||||||||
4ran | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | PHE | A:73 | A:73 | 1.0 | 0.005 | H | -62.5 | -38.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.946 7.054 |
CD2 N |
MG O |
||
PHE | B:73 | B:73 | 1.0 | 0.005 | H | -62.0 | -44.5 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.910 8.776 |
CD2 CZ |
MG O |
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PHE | C:73 | C:73 | 1.0 | 0.005 | H | -61.6 | -44.3 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.829 9.942 |
CD2 CB |
MG O |
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PHE | D:73 | D:73 | 1.0 | 0.005 | H | -67.5 | -35.6 | 1.0 | 0.005 | 0.0 |
MG |
9.774 |
CD2 |
MG |
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4rao | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | PHE | A:73 | A:73 | 2.0 | 0.01 | H | -54.8 | -42.9 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.532 2.936 |
CD2 N |
MG O |
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PHE | B:73 | B:73 | 1.0 | 0.005 | H | -56.5 | -41.3 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.175 2.827 |
CD2 N |
MG O |
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PHE | C:73 | C:73 | 1.0 | 0.005 | H | -52.5 | -44.6 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.423 2.820 |
CD2 N |
MG O |
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PHE | D:73 | D:73 | 1.0 | 0.005 | H | -59.8 | -40.1 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.500 2.778 |
CD2 N |
MG O |
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4raq | 1 | P00492 | 100.0 | 3e-161 |
X-RAY |
2015-01-07 | PHE | A:73 | A:73 | 1.0 | 0.005 | H | -52.7 | -48.5 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.676 3.051 |
CB N |
MG O |
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PHE | B:73 | B:73 | 2.0 | 0.01 | H | -63.5 | -45.4 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.774 6.852 |
CB O |
MG O |
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PHE | C:73 | C:73 | 1.0 | 0.005 | H | -54.9 | -41.0 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.650 7.139 |
CD2 O |
MG O |
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PHE | D:73 | D:73 | 1.0 | 0.005 | H | -52.6 | -49.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.775 2.882 |
CB N |
MG O |
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4ijq | 1 | P00492 | 100.0 | 4e-161 |
X-RAY |
2013-03-27 | PHE | A:79 | A:73 | 1.0 | 0.005 | H | -57.6 | -39.0 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.175 2.901 |
CD2 N |
MG O |
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PHE | B:79 | B:73 | 2.0 | 0.01 | H | -56.0 | -42.9 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.217 2.839 |
CD2 N |
MG O |
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PHE | C:79 | C:73 | 1.0 | 0.005 | H | -52.5 | -41.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.178 2.794 |
CD2 N |
MG O |
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PHE | D:79 | D:73 | 2.0 | 0.01 | H | -59.7 | -43.4 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.386 2.862 |
CD2 N |
MG O |
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4kn6 | 1 | P00492 | 100.0 | 1e-160 |
X-RAY |
2013-08-14 | PHE | A:72 | A:73 | 5.0 | 0.024 | H | -58.0 | -59.3 | 5.0 | 0.024 | 0.0 |
1RP HOH |
9.665 2.110 |
HD2 H |
O2' O |
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6bnj | 1 | P00492 | 99.08 | 6e-160 |
X-RAY |
2017-12-06 | PHE | A:74 | A:73 | 2.0 | 0.01 | H | -53.1 | -45.6 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.372 2.824 |
CD2 N |
MG O |
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PHE | B:74 | B:73 | 2.0 | 0.01 | H | -52.7 | -45.5 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.571 2.778 |
CD2 N |
MG O |
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PHE | C:74 | C:73 | 1.0 | 0.005 | H | -53.4 | -44.3 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.190 2.811 |
CD2 N |
MG O |
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PHE | D:74 | D:73 | 1.0 | 0.005 | H | -58.7 | -43.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.199 2.696 |
CD2 N |
MG O |
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5hia | 1 | P00492 | 99.08 | 8e-160 |
X-RAY |
2017-01-18 | PHE | A:80 | A:73 | 2.0 | 0.01 | H | -55.3 | -42.7 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.256 2.953 |
CD2 N |
MG O |
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PHE | B:80 | B:73 | 1.0 | 0.005 | H | -58.7 | -42.5 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.198 3.031 |
CD2 N |
MG O |
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PHE | C:80 | C:73 | 1.0 | 0.005 | H | -54.1 | -44.7 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.208 2.873 |
CD2 N |
MG O |
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PHE | D:80 | D:73 | 2.0 | 0.01 | H | -54.1 | -43.3 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.266 2.876 |
CD2 N |
MG O |
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5brn | 1 | P00492 | 98.62 | 3e-159 |
X-RAY |
2015-10-14 | PHE | A:74 | A:73 | 1.0 | 0.005 | H | -57.1 | -39.8 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.674 3.036 |
CD2 N |
MG O |
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PHE | B:74 | B:73 | 0.0 | 0.0 | H | -66.2 | -37.1 | 0.0 | 0.0 | 0.0 |
MG HOH |
9.235 3.108 |
CD2 N |
MG O |
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PHE | C:74 | C:73 | 2.0 | 0.01 | H | -63.5 | -37.4 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.656 2.979 |
CD2 N |
MG O |
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PHE | D:74 | D:73 | 1.0 | 0.005 | H | -52.8 | -43.8 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.546 2.745 |
CD2 N |
MG O |
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5bsk | 1 | P00492 | 98.62 | 3e-159 |
X-RAY |
2015-09-23 | PHE | A:74 | A:73 | 0.0 | 0.0 | H | -71.9 | -34.7 | 0.0 | 0.0 | 0.0 |
MG HOH |
8.268 6.974 |
CD2 N |
MG O |
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PHE | B:74 | B:73 | 0.0 | 0.0 | H | -67.7 | -34.3 | 0.0 | 0.0 | 0.0 |
MG HOH |
8.633 5.223 |
CD2 N |
MG O |
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PHE | C:74 | C:73 | 0.0 | 0.0 | H | -66.5 | -35.8 | 0.0 | 0.0 | 0.0 |
MG HOH |
8.693 9.146 |
CD2 CB |
MG O |
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PHE | D:74 | D:73 | 0.0 | 0.0 | H | -70.8 | -38.0 | 0.0 | 0.0 | 0.0 |
MG HOH |
9.095 7.323 |
CD2 N |
MG O |
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5w8v | 1 | P00492 | 100.0 | 7e-159 |
X-RAY |
2017-08-30 | PHE | A:71 | A:73 | 0.0 | 0.0 | H | -65.4 | -33.3 | 0.0 | 0.0 | 0.0 |
MG HOH |
9.483 2.923 |
CD2 N |
MG O |
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PHE | B:71 | B:73 | 1.0 | 0.005 | H | -59.1 | -40.4 | 1.0 | 0.005 | 0.0 |
MG HOH |
9.468 2.964 |
CD2 N |
MG O |
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PHE | C:71 | C:73 | 2.0 | 0.01 | H | -59.1 | -38.7 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.653 2.829 |
CD2 N |
MG O |
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PHE | D:71 | D:73 | 2.0 | 0.01 | H | -62.2 | -36.4 | 2.0 | 0.01 | 0.0 |
MG HOH |
9.472 2.857 |
CD2 N |
MG O |
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1d6n | 1 | P00492 | 99.07 | 6e-157 |
X-RAY |
1999-12-30 | PHE | A:70 | A:73 | 2.0 | 0.01 | H | -22.7 | -54.0 | 2.0 | 0.01 | 0.0 |
MG PRP HOH |
7.693 8.323 6.261 |
CD2 CB CD2 |
MG O2B O |
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PHE | B:70 | B:73 | 0.0 | 0.0 | H | -40.0 | -28.9 | 0.0 | 0.0 | 0.0 |
MG PRP HOH |
9.092 8.497 6.906 |
CD2 CB N |
MG O2B O |
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2vfa | 1 | P20035,P00492 | 80.48 | 3e-122 |
X-RAY |
2008-06-17 | PHE | A:82 | A:82 | 0.0 | 0.0 | H | -60.8 | -45.3 | 0.0 | 0.0 | 0.0 |
HOH |
5.613 |
N |
O |
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PHE | B:82 | B:82 | 0.0 | 0.0 | H | -61.9 | -45.0 | 0.0 | 0.0 | 0.0 |
HOH |
6.592 |
N |
O |
AlphaFold DB
Entity | Residue | Monomer | View | ||||||||||
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ID | Entity | Uniprot | Identity | Evalue | Name | Label | Auth | ASA | rASA | SS | φ | ψ | |
af-p00492-f1 | 1 | P00492 | 100.0 | 2e-162 | PHE | A:74 | A:74 | 1.0 | 0.005 | H | -58.6 | -42.5 |