Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135738536 . C A CCDS14659.1:NM_000074.2:c.368gCg>gAg_NP_000065.1:p.123A>E Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 ALA A:8 A:123 19.0 0.165 E -153.5 148.4 0.0 0.0 0.165 A:P29965:0.165
 HOH
 5.896
 O
 H2
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 ALA A:8 A:123 27.0 0.235 E -149.1 162.0 1.0 0.009 0.226 B:P29965:0.226
ALA B:8 B:123 26.0 0.226 E -153.5 165.1 0.0 0.0 0.226 C:P29965:0.226
ALA C:8 C:123 26.0 0.226 E -155.7 165.8 0.0 0.0 0.226 A:P29965:0.226
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 ALA A:8 A:123 26.0 0.226 E -160.6 152.5 0.0 0.0 0.226 B:P29965:0.226
 TRS
HOH
 8.798
2.981
 CB
N
 C3
O
ALA B:8 B:123 26.0 0.226 E -159.8 152.7 0.0 0.0 0.226 C:P29965:0.226
 TRS
HOH
 7.700
5.211
 CB
N
 O2
O
ALA C:8 C:123 25.0 0.217 E -159.2 151.4 0.0 0.0 0.217 A:P29965:0.217
 TRS
PEG
HOH
 8.312
8.485
5.214
 CB
O
N
 O1
C2
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 ALA A:8 A:123 27.0 0.235 E -159.2 155.1 0.0 0.0 0.235 B:P29965:0.235
 TRS
HOH
 7.591
3.065
 CB
N
 O1
O
ALA B:8 B:123 28.0 0.243 E -160.3 150.0 0.0 0.0 0.243 C:P29965:0.243
 TRS
HOH
 7.689
3.307
 CB
N
 O3
O
ALA C:8 C:123 26.0 0.226 E -156.4 154.8 0.0 0.0 0.226 A:P29965:0.226
 TRS
HOH
 7.698
5.020
 CB
N
 O2
O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 ALA A:11 A:123 27.0 0.235 E -147.2 155.5 0.0 0.0 0.235 B:P29965:0.235
ALA B:11 B:123 28.0 0.243 E -151.8 160.8 1.0 0.009 0.234 C:P29965:0.235
ALA C:11 C:123 27.0 0.235 E -151.4 157.3 1.0 0.009 0.226 A:P29965:0.226
ALA D:11 D:123 25.0 0.217 E -153.5 152.9 NA NA NA
ALA E:11 E:123 26.0 0.226 E -148.2 158.5 NA NA NA
ALA F:11 F:123 26.0 0.226 E -147.1 161.2 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 ALA A:4 A:123 26.0 0.226 E -144.0 159.6 1.0 0.009 0.217 A:P29965:0.217
 HOH
 7.863
 O
 O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 ALA A:3 A:123 19.0 0.165 E -154.1 151.7 0.0 0.0 0.165 B:P29965:0.165
 LKJ
HOH
 9.302
8.705
 CB
O
 C34
O
ALA B:3 B:123 24.0 0.209 E -163.3 149.7 0.0 0.0 0.209 C:P29965:0.209
 LKJ
HOH
 8.984
7.250
 CB
N
 C40
O
ALA C:3 C:123 39.0 0.339 E -157.5 141.5 39.0 0.339 0.0 LKJ
HOH
 3.646
3.702
 CB
CB
 C3
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 ALA A:123 A:123 29.0 0.252 E -143.1 150.8