Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741389 . T A CCDS14659.1:NM_000074.2:c.601Ttc>Atc_NP_000065.1:p.201F>I Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 PHE A:86 A:201 209.0 0.995 -45.7 -31.4 209.0 0.995 0.0 HOH
 2.267
 H
 O
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 PHE A:86 A:201 197.0 0.938 -71.7 163.1 197.0 0.938 0.0
PHE B:86 B:201 195.0 0.929 -72.9 167.4 195.0 0.929 0.0
PHE C:86 C:201 194.0 0.924 -72.4 167.6 194.0 0.924 0.0
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 PHE A:86 A:201 195.0 0.929 -71.0 150.2 194.0 0.924 0.005 I:None:0.005
 NAG
NAG
BMA
MAN
PEG
ETE
HOH
 7.349
6.645
9.334
8.374
8.960
3.605
2.850
 C
C
CE1
CE1
C
CE1
O
 C8
C8
O6
C2
C1
C12
O
PHE B:86 B:201 196.0 0.933 -74.1 148.8 196.0 0.933 0.0 NAG
NAG
BMA
MAN
PEG
ETE
HOH
 7.234
6.738
9.837
7.488
8.793
3.805
2.736
 C
C
CD1
CE1
C
CE1
O
 C8
C8
O2
O3
C3
C15
O
PHE C:86 C:201 191.0 0.91 -71.2 153.9 190.0 0.905 0.005 G:None:0.005
 NAG
NAG
BMA
MAN
PEG
1PE
HOH
 7.411
6.526
9.376
7.858
8.642
3.743
2.682
 C
C
CD1
CE1
C
CZ
O
 O6
C8
O2
O3
O1
OH3
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 PHE A:86 A:201 194.0 0.924 -73.1 151.8 193.0 0.919 0.005 I:None:0.005
 NAG
PEG
HOH
 7.492
3.567
2.782
 C
CE1
O
 C8
C4
O
PHE B:86 B:201 197.0 0.938 -74.0 154.1 193.0 0.919 0.019 E:None:0.019
 NAG
PEG
PEG
HOH
 7.163
3.226
7.681
2.724
 C
CE1
CB
O
 C8
C2
O4
O
PHE C:86 C:201 194.0 0.924 -68.8 147.6 193.0 0.919 0.005 G:None:0.005
 NAG
PEG
HOH
 7.237
3.579
2.893
 C
CE1
O
 C8
O4
O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 PHE A:89 A:201 197.0 0.938 -61.9 143.3 147.0 0.7 0.238 H:P25942:0.238
 NAG
 8.807
 C
 O6
PHE B:89 B:201 197.0 0.938 -63.3 134.7 197.0 0.938 0.0
PHE C:89 C:201 199.0 0.948 -56.9 142.5 139.0 0.662 0.286 G:P25942:0.286
PHE D:89 D:201 196.0 0.933 -56.7 142.5 NA NA NA
PHE E:89 E:201 199.0 0.948 -61.0 137.5 NA NA NA
PHE F:89 F:201 197.0 0.938 -59.6 138.1 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 PHE A:82 A:201 188.0 0.895 -67.1 169.6 188.0 0.895 0.0 NAG
NAG
BMA
HOH
 7.555
5.436
6.249
8.682
 CE2
CD2
CE2
O
 O6
C8
O6
O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 PHE A:81 A:201 162.0 0.771 -82.7 156.2 162.0 0.771 0.0 NAG
NAG
HOH
 7.552
6.698
2.630
 C
C
N
 O6
C8
O
PHE B:81 B:201 213.0 1.0 -61.2 149.6 213.0 1.0 0.0 NAG
NAG
HOH
 8.201
6.667
4.110
 C
C
CD1
 O6
C8
O
PHE C:81 C:201 173.0 0.824 E -53.5 160.1 173.0 0.824 0.0 NAG
NAG
HOH
 7.143
6.427
2.615
 C
C
O
 O6
C8
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 PHE A:201 A:201 197.0 0.938 -63.9 151.9