Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741392 . G A CCDS14659.1:NM_000074.2:c.604Gag>Aag_NP_000065.1:p.202E>K Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 GLU A:87 A:202 117.0 0.616 96.1 136.8 117.0 0.616 0.0 HOH
 2.613
 OE2
 H2
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 GLU A:87 A:202 129.0 0.679 -53.8 -171.7 129.0 0.679 0.0
GLU B:87 B:202 127.0 0.668 -55.7 -170.2 127.0 0.668 0.0
GLU C:87 C:202 128.0 0.674 -57.3 -173.2 128.0 0.674 0.0
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 GLU A:87 A:202 127.0 0.668 -60.1 154.1 127.0 0.668 0.0 NAG
NAG
BMA
PEG
ETE
HOH
 2.428
3.776
7.664
4.835
5.918
2.763
 OE1
O
OE1
OE2
N
O
 O3
C8
C1
C4
C12
O
GLU B:87 B:202 126.0 0.663 -54.1 152.2 126.0 0.663 0.0 NAG
NAG
BMA
PEG
ETE
HOH
 2.587
3.773
7.771
5.065
6.075
2.599
 OE2
O
OE2
OE1
N
OE2
 O3
C8
C1
C3
OH6
O
GLU C:87 C:202 128.0 0.674 -61.9 153.5 128.0 0.674 0.0 NAG
NAG
BMA
PEG
1PE
HOH
 2.561
3.626
7.692
4.920
5.872
2.598
 OE1
O
OE1
OE2
N
OE1
 O3
C8
C1
C2
C22
O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 GLU A:87 A:202 128.0 0.674 -52.7 149.4 128.0 0.674 0.0 NAG
PEG
HOH
 2.345
5.972
2.545
 OE1
N
OE1
 O3
C4
O
GLU B:87 B:202 117.0 0.616 -62.4 158.9 117.0 0.616 0.0 NAG
PEG
PEG
HOH
 2.865
5.841
5.274
2.383
 OE2
N
OE2
OE1
 N2
O2
C3
O
GLU C:87 C:202 124.0 0.653 -39.3 143.7 124.0 0.653 0.0 NAG
PEG
HOH
 2.760
5.812
2.782
 OE1
N
O
 O3
O4
O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 GLU A:90 A:202 88.0 0.463 -63.0 154.4 87.0 0.458 0.005 H:P25942:0.005
 NAG
 2.465
 OE2
 O6
GLU B:90 B:202 91.0 0.479 -54.7 157.9 91.0 0.479 0.0 NAG
 6.066
 OE2
 O5
GLU C:90 C:202 89.0 0.468 -64.8 153.5 88.0 0.463 0.005 G:P25942:0.005
 NAG
 4.446
 OE1
 O6
GLU D:90 D:202 87.0 0.458 -63.1 157.9 NA NA NA
GLU E:90 E:202 85.0 0.447 -58.1 158.7 NA NA NA
GLU F:90 F:202 88.0 0.463 -59.6 157.6 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 GLU A:83 A:202 125.0 0.658 E -68.6 151.5 125.0 0.658 0.0 NAG
NAG
BMA
HOH
 2.603
3.146
9.258
8.910
 OE1
O
O
CG
 O6
C8
O5
O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 GLU A:82 A:202 115.0 0.605 -60.5 150.8 115.0 0.605 0.0 NAG
NAG
HOH
 2.313
3.714
4.812
 OE1
O
OE2
 O6
C8
O
GLU B:82 B:202 118.0 0.621 -59.8 148.2 118.0 0.621 0.0 NAG
NAG
HOH
 2.816
3.667
3.719
 OE1
O
OE2
 O6
C8
O
GLU C:82 C:202 113.0 0.595 E -63.0 153.9 113.0 0.595 0.0 NAG
NAG
HOH
 2.265
3.547
2.897
 OE1
O
N
 O6
C8
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 GLU A:202 A:202 105.0 0.553 -64.1 138.3