Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 135741462 . T A CCDS14659.1:NM_000074.2:c.674tTg>tAg_NP_000065.1:p.225L>* Homo sapiens CD40 ligand (CD40LG), mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
1aly 1 P29965 100.0 9e-107 X-RAY
 1997-09-17 LEU A:110 A:225 8.0 0.047 E -113.7 136.1 0.0 0.0 0.047 A:P29965:0.047
 HOH
 4.790
 N
 H2
1i9r 1 P29965 100.0 9e-107 X-RAY
 2002-03-20 LEU A:110 A:225 13.0 0.076 E -143.9 124.7 1.0 0.006 0.07 C:P29965:0.071
LEU B:110 B:225 12.0 0.071 E -139.7 122.0 2.0 0.012 0.059 A:P29965:0.059
LEU C:110 C:225 11.0 0.065 E -139.0 124.7 2.0 0.012 0.053 B:P29965:0.053
6w9g 1 P29965 100.0 9e-107 X-RAY
 2020-12-23 LEU A:110 A:225 17.0 0.1 E -129.7 141.1 3.0 0.018 0.082 C:P29965:0.082
 HOH
 3.356
 CA
 O
LEU B:110 B:225 13.0 0.076 E -123.6 144.8 2.0 0.012 0.064 A:P29965:0.065
 NAG
HOH
 9.107
4.188
 CD1
CD2
 O7
O
LEU C:110 C:225 15.0 0.088 E -126.5 144.0 2.0 0.012 0.076 B:P29965:0.076
 HOH
 4.855
 O
 O
7sgm 1 P29965 100.0 9e-107 X-RAY
 2022-02-02 LEU A:110 A:225 18.0 0.106 E -127.4 143.7 2.0 0.012 0.094 C:P29965:0.094
 HOH
 3.753
 CD2
 O
LEU B:110 B:225 15.0 0.088 E -123.5 145.5 4.0 0.024 0.064 A:P29965:0.065
 HOH
 4.113
 CD2
 O
LEU C:110 C:225 13.0 0.076 E -121.6 143.1 1.0 0.006 0.07 B:P29965:0.071
 HOH
 4.110
 CD1
 O
3qd6 1 P29965 100.0 1e-106 X-RAY
 2011-02-02 LEU A:113 A:225 8.0 0.047 E -122.3 145.9 1.0 0.006 0.041 C:P29965:0.041
LEU B:113 B:225 7.0 0.041 E -124.5 145.5 1.0 0.006 0.035 A:P29965:0.035
 NAG
 9.691
 CD2
 O7
LEU C:113 C:225 6.0 0.035 E -125.5 145.0 1.0 0.006 0.029 B:P29965:0.029
LEU D:113 D:225 7.0 0.041 E -124.3 143.8 NA NA NA
LEU E:113 E:225 8.0 0.047 E -125.3 145.7 NA NA NA
LEU F:113 F:225 7.0 0.041 E -119.6 145.5 NA NA NA
6brb 1 P29965 100.0 5e-103 X-RAY
 2018-12-05 LEU A:106 A:225 11.0 0.065 E -109.5 140.1 2.0 0.012 0.053 A:P29965:0.053
 NAG
HOH
 9.526
9.251
 CD1
CD2
 C8
O
3lkj 1 P29965 100.0 6e-102 X-RAY
 2011-02-02 LEU A:105 A:225 9.0 0.053 E -128.9 141.5 9.0 0.053 0.0 NAG
LKJ
HOH
 9.961
6.802
4.619
 CD1
O
N
 C1
C21
O
LEU B:105 B:225 13.0 0.076 E -125.8 131.7 8.0 0.047 0.029 A:P29965:0.029
 NAG
LKJ
HOH
 8.167
3.478
6.131
 CD1
N
C
 C8
C26
O
LEU C:105 C:225 13.0 0.076 E -118.7 142.2 6.0 0.035 0.041 B:P29965:0.041
 LKJ
NAG
HOH
 3.199
8.557
4.809
 O
CD1
N
 C18
C8
O

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p29965-f1 1 P29965 100.0 0.0 LEU A:225 A:225 12.0 0.071 E -117.9 135.3