Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 16864009 . T A CCDS14179.1:NM_002893.3:c.1151aAt>aTt_NP_002884.1:p.384N>I Homo sapiens RB binding protein 7, chromatin remodeling factor (RBBP7), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3cfs 1 Q16576 99.26 0.0 X-RAY
 2008-06-10 ASN A:387 B:384 63.0 0.394 S -111.8 -26.9 63.0 0.394 0.0 HOH
 2.766
 OD1
 O
3cfv 1 Q16576 99.26 0.0 X-RAY
 2008-06-10 ASN A:387 B:384 64.0 0.4 S -114.5 -25.4 64.0 0.4 0.0 HOH
 2.874
 ND2
 O
ASN C:387 A:384 61.0 0.381 S -119.5 -23.5 NA NA NA
7m3x 1 Q16576 99.75 0.0 X-RAY
 2021-05-05 ASN A:380 A:384 64.0 0.4 S -109.5 -26.8 64.0 0.4 0.0 HOH
 2.551
 OD1
 O
5wai 1 Q09028 89.1 0.0 X-RAY
 2018-03-14 ASN A:399 A:385 74.0 0.463 S -109.1 -22.6 9.0 0.056 0.407 B:Q15022:0.406
ASN E:399 E:385 50.0 0.312 S -105.0 -18.2 NA NA NA
5wak 1 Q09028 89.1 0.0 X-RAY
 2018-03-14 ASN A:399 A:385 52.0 0.325 S -111.4 -31.9 52.0 0.325 0.0
6nq3 1 Q09028 89.1 0.0 X-RAY
 2020-01-29 ASN A:399 A:385 51.0 0.319 S -111.2 -16.1 51.0 0.319 0.0
ASN E:399 E:385 49.0 0.306 S -90.4 -37.7 NA NA NA
2xu7 1 Q09028 89.1 0.0 X-RAY
 2010-11-03 ASN A:385 A:385 62.0 0.388 S -108.2 -24.7 62.0 0.388 0.0 HOH
 2.797
 ND2
 O
ASN B:385 B:385 50.0 0.312 S -115.3 -16.2 NA NA NA
3gfc 1 Q09028 89.1 0.0 X-RAY
 2009-04-14 ASN A:385 A:385 76.0 0.475 S -97.1 -13.6 76.0 0.475 0.0 HOH
 3.900
 O
 O
4pby 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 ASN A:385 A:385 69.0 0.431 S -109.7 -21.7 69.0 0.431 0.0 HOH
 2.655
 OD1
 O
ASN B:385 B:385 53.0 0.331 S -111.5 -25.8 NA NA NA
4pbz 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 ASN A:385 A:385 49.0 0.306 S -110.8 -26.8 49.0 0.306 0.0 HOH
 2.643
 ND2
 O
4pc0 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 ASN A:385 A:385 63.0 0.394 S -104.3 -25.4 63.0 0.394 0.0 GOL
HOH
 7.805
2.851
 O
OD1
 O1
O
ASN B:385 B:385 57.0 0.356 S -104.8 -26.7 NA NA NA
4r7a 2 Q09028 89.1 0.0 X-RAY
 2015-01-14 ASN B:385 B:385 55.0 0.344 S -103.6 -16.6 55.0 0.344 0.0 HOH
 2.874
 OD1
 O
5fxy 1 Q09028 89.1 0.0 X-RAY
 2016-05-18 ASN A:385 A:385 58.0 0.362 S -98.9 -47.6 58.0 0.362 0.0
ASN C:385 C:385 50.0 0.312 S -97.8 -51.5 NA NA NA
ASN E:385 E:385 70.0 0.438 S -100.4 -49.8 NA NA NA
ASN G:385 G:385 64.0 0.4 S -89.7 -55.6 NA NA NA
6c23 5 Q09028 89.1 0.0 EM
 2018-01-24 ASN F:385 N:385 83.0 0.519 S 63.6 8.4 83.0 0.519 0.0
6c24 6 Q09028 89.1 0.0 EM
 2018-01-24 ASN G:385 N:385 77.0 0.481 T 69.3 4.4 77.0 0.481 0.0
6g16 1 Q09028 89.1 0.0 X-RAY
 2018-06-13 ASN A:385 A:385 71.0 0.444 S -111.1 -32.5 71.0 0.444 0.0
ASN C:385 C:385 62.0 0.388 S -115.7 -35.2 NA NA NA
ASN E:385 E:385 70.0 0.438 S -115.2 -34.1 NA NA NA
ASN G:385 G:385 70.0 0.438 S -113.4 -31.8 NA NA NA
6wkr 4 Q09028 89.1 0.0 EM
 2021-02-03 ASN D:385 N:385 37.0 0.231 S 66.6 -0.6 37.0 0.231 0.0
6zrd 1 Q09028 89.1 0.0 X-RAY
 2020-12-02 ASN A:385 A:385 57.0 0.356 S -110.6 -30.0 57.0 0.356 0.0
ASN B:385 B:385 57.0 0.356 S -110.4 -30.7 NA NA NA
7aoa 4 Q09028 89.1 0.0 EM
 2020-11-11 ASN F:385 F:385 58.0 0.362 S -94.0 -41.6 58.0 0.362 0.0
ASN G:385 G:385 58.0 0.362 S -94.1 -41.5 58.0 0.362 0.0
7kso 4 Q09028 89.1 0.0 EM
 2021-02-03 ASN D:385 D:385 44.0 0.275 T -140.8 25.9 44.0 0.275 0.0
7ksr 2 Q09028 89.1 0.0 EM
 2021-02-03 ASN B:385 D:385 49.0 0.306 T -141.4 29.8 49.0 0.306 0.0
7ktp 4 Q09028 89.1 0.0 EM
 2021-02-03 ASN D:385 D:385 43.0 0.269 T -140.8 28.2 43.0 0.269 0.0
6bw3 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 ASN A:387 C:385 52.0 0.325 S -114.6 -13.7 52.0 0.325 0.0 HOH
 2.933
 ND2
 O
ASN C:387 A:385 59.0 0.369 S -113.9 -17.6 NA NA NA
6bw4 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 ASN A:387 C:385 51.0 0.319 S -112.7 -13.9 51.0 0.319 0.0 HOH
 2.832
 ND2
 O
ASN C:387 A:385 58.0 0.362 S -112.8 -17.0 NA NA NA
6zrc 1 Q09028 89.1 0.0 X-RAY
 2020-10-28 ASN A:387 A:385 54.0 0.338 S -116.3 -26.1 54.0 0.338 0.0
ASN D:387 B:385 51.0 0.319 S -114.5 -27.5 NA NA NA
5vtb 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 ASN A:392 A:385 72.0 0.45 S -102.4 -21.5 72.0 0.45 0.0 HOH
 2.900
 ND2
 O
5xxq 1 Q09028 89.1 0.0 X-RAY
 2018-08-08 ASN A:416 A:385 59.0 0.369 S -118.7 -16.4 59.0 0.369 0.0 HOH
 2.839
 ND2
 O
ASN B:416 B:385 52.0 0.325 S -109.7 -13.0 NA NA NA
5y1u 1 Q09028 89.1 0.0 X-RAY
 2018-04-18 ASN A:416 A:416 60.0 0.375 S -115.3 -14.1 60.0 0.375 0.0 HOH
 2.970
 OD1
 O
ASN B:416 B:416 54.0 0.338 S -104.4 -18.7 NA NA NA
7m40 1 Q09028 89.1 0.0 X-RAY
 2021-05-12 ASN A:403 A:385 59.0 0.369 S -111.3 -20.9 59.0 0.369 0.0 HOH
 2.795
 ND2
 O
ASN B:403 B:385 53.0 0.331 S -105.4 -26.1 NA NA NA
5xwr 1 Q09028 89.1 0.0 X-RAY
 2018-07-11 ASN A:403 A:385 64.0 0.4 S -111.7 -24.0 64.0 0.4 0.0 HOH
 2.266
 ND2
 O
ASN B:403 B:385 52.0 0.325 S -113.0 -26.0 52.0 0.325 0.0 HOH
 2.578
 OD1
 O
3c99 1 Q24572 86.51 0.0 X-RAY
 2008-05-13 ASN A:391 A:389 64.0 0.4 S -112.3 -24.3 64.0 0.4 0.0
3c9c 1 Q24572 86.51 0.0 X-RAY
 2008-05-13 ASN A:391 A:389 63.0 0.394 S -107.9 -33.0 63.0 0.394 0.0
2xyi 1 Q24572 86.51 0.0 X-RAY
 2011-05-04 ASN A:389 A:389 72.0 0.45 S -109.9 -23.8 72.0 0.45 0.0 HOH
 2.893
 ND2
 O
2yb8 2 Q24572 87.44 0.0 X-RAY
 2011-05-18 ASN B:393 B:389 69.0 0.431 S -108.3 -30.5 69.0 0.431 0.0 HOH
 2.660
 ND2
 O
2yba 1 Q24572 87.44 0.0 X-RAY
 2011-05-11 ASN A:393 A:389 72.0 0.45 S -100.8 -31.9 72.0 0.45 0.0 HOH
 2.964
 O
 O
ASN B:393 B:389 71.0 0.444 S -103.2 -31.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16576-f1 1 Q16576 99.29 0.0 ASN A:384 A:384 71.0 0.444 S -109.3 -32.5
af-q09028-f1 1 Q09028 89.1 0.0 ASN A:385 A:385 65.0 0.406 S -106.2 -32.1