Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 16871919 . A C CCDS14179.1:NM_002893.3:c.644aTt>aGt_NP_002884.1:p.215I>S Homo sapiens RB binding protein 7, chromatin remodeling factor (RBBP7), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3cfs 1 Q16576 99.26 0.0 X-RAY
 2008-06-10 ILE A:218 B:215 72.0 0.411 E -105.9 130.7 72.0 0.411 0.0 HOH
 3.426
 CD1
 O
3cfv 1 Q16576 99.26 0.0 X-RAY
 2008-06-10 ILE A:218 B:215 75.0 0.429 E -131.6 123.0 75.0 0.429 0.0 HOH
 3.366
 CG1
 O
ILE C:218 A:215 68.0 0.389 E -109.9 141.6 NA NA NA
7m3x 1 Q16576 99.75 0.0 X-RAY
 2021-05-05 ILE A:211 A:215 57.0 0.326 E -107.9 133.3 57.0 0.326 0.0 HOH
 3.947
 CG2
 O
5wai 1 Q09028 89.1 0.0 X-RAY
 2018-03-14 VAL A:230 A:216 51.0 0.329 E -106.6 137.9 51.0 0.329 0.0
VAL E:230 E:216 72.0 0.465 -152.1 122.3 NA NA NA
5wak 1 Q09028 89.1 0.0 X-RAY
 2018-03-14 VAL A:230 A:216 78.0 0.503 E -102.3 132.3 78.0 0.503 0.0
6nq3 1 Q09028 89.1 0.0 X-RAY
 2020-01-29 VAL A:230 A:216 77.0 0.497 E -94.9 134.2 77.0 0.497 0.0
VAL E:230 E:216 80.0 0.516 E -119.4 115.7 NA NA NA
2xu7 1 Q09028 89.1 0.0 X-RAY
 2010-11-03 VAL A:216 A:216 76.0 0.49 E -94.8 133.8 76.0 0.49 0.0 HOH
 7.789
 CG1
 O
VAL B:216 B:216 65.0 0.419 E -74.0 134.2 NA NA NA
3gfc 1 Q09028 89.1 0.0 X-RAY
 2009-04-14 VAL A:216 A:216 66.0 0.426 E -139.4 133.4 66.0 0.426 0.0 HOH
 2.685
 O
 O
4pby 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 VAL A:216 A:216 71.0 0.458 E -93.7 134.0 71.0 0.458 0.0 HOH
 4.208
 O
 O
VAL B:216 B:216 70.0 0.452 E -96.4 145.8 NA NA NA
4pbz 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 VAL A:216 A:216 58.0 0.374 -149.3 128.8 58.0 0.374 0.0
4pc0 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 VAL A:216 A:216 63.0 0.406 E -127.0 145.5 63.0 0.406 0.0 HOH
 4.302
 O
 O
VAL B:216 B:216 69.0 0.445 E -125.6 143.5 NA NA NA
4r7a 2 Q09028 89.1 0.0 X-RAY
 2015-01-14 VAL B:216 B:216 63.0 0.406 E -132.8 136.8 63.0 0.406 0.0 HOH
 4.147
 O
 O
5fxy 1 Q09028 89.1 0.0 X-RAY
 2016-05-18 VAL A:216 A:216 72.0 0.465 E -87.0 144.2 72.0 0.465 0.0
VAL C:216 C:216 76.0 0.49 E -144.5 137.6 NA NA NA
VAL E:216 E:216 86.0 0.555 E -131.3 136.1 NA NA NA
VAL G:216 G:216 78.0 0.503 E -133.6 142.2 NA NA NA
6c23 5 Q09028 89.1 0.0 EM
 2018-01-24 VAL F:216 N:216 68.0 0.439 S -77.5 150.9 68.0 0.439 0.0
6c24 6 Q09028 89.1 0.0 EM
 2018-01-24 VAL G:216 N:216 72.0 0.465 S -77.7 156.2 72.0 0.465 0.0
6g16 1 Q09028 89.1 0.0 X-RAY
 2018-06-13 VAL A:216 A:216 127.0 0.819 -94.7 143.0 127.0 0.819 0.0
VAL C:216 C:216 111.0 0.716 S -92.1 144.4 NA NA NA
VAL E:216 E:216 126.0 0.813 -92.3 141.0 NA NA NA
VAL G:216 G:216 111.0 0.716 -92.4 146.2 NA NA NA
6wkr 4 Q09028 89.1 0.0 EM
 2021-02-03 VAL D:216 N:216 66.0 0.426 -137.8 110.1 66.0 0.426 0.0
6zrd 1 Q09028 89.1 0.0 X-RAY
 2020-12-02 VAL A:216 A:216 62.0 0.4 E -102.7 122.7 62.0 0.4 0.0
VAL B:216 B:216 68.0 0.439 E -101.4 123.2 NA NA NA
7aoa 4 Q09028 89.1 0.0 EM
 2020-11-11 VAL F:216 F:216 72.0 0.465 E -77.9 141.6 72.0 0.465 0.0
VAL G:216 G:216 72.0 0.465 E -78.0 141.5 72.0 0.465 0.0
7kso 4 Q09028 89.1 0.0 EM
 2021-02-03 VAL D:216 D:216 87.0 0.561 -118.8 139.3 87.0 0.561 0.0
7ksr 2 Q09028 89.1 0.0 EM
 2021-02-03 VAL B:216 D:216 82.0 0.529 -96.2 135.2 82.0 0.529 0.0
7ktp 4 Q09028 89.1 0.0 EM
 2021-02-03 VAL D:216 D:216 88.0 0.568 -113.2 139.1 88.0 0.568 0.0
6bw3 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 VAL A:218 C:216 90.0 0.581 E -111.2 124.7 90.0 0.581 0.0 HOH
 7.526
 CG1
 O
VAL C:218 A:216 74.0 0.477 E -112.6 122.5 NA NA NA
6bw4 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 VAL A:218 C:216 91.0 0.587 E -98.3 129.5 91.0 0.587 0.0 HOH
 7.424
 CG1
 O
VAL C:218 A:216 74.0 0.477 E -101.1 126.3 NA NA NA
6zrc 1 Q09028 89.1 0.0 X-RAY
 2020-10-28 VAL A:218 A:216 102.0 0.658 -115.6 123.7 102.0 0.658 0.0
VAL D:218 B:216 106.0 0.684 -114.1 120.9 NA NA NA
5vtb 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 VAL A:223 A:216 69.0 0.445 E -132.6 129.7 69.0 0.445 0.0 HOH
 4.161
 O
 O
5xxq 1 Q09028 89.1 0.0 X-RAY
 2018-08-08 VAL A:247 A:216 73.0 0.471 E -98.3 130.6 73.0 0.471 0.0 HOH
 2.662
 N
 O
VAL B:247 B:216 5.0 0.032 E -102.8 128.7 NA NA NA
5y1u 1 Q09028 89.1 0.0 X-RAY
 2018-04-18 VAL A:247 A:247 58.0 0.374 E -93.3 132.8 58.0 0.374 0.0 HOH
 3.863
 O
 O
VAL B:247 B:247 64.0 0.413 E -98.1 133.5 NA NA NA
7m40 1 Q09028 89.1 0.0 X-RAY
 2021-05-12 VAL A:234 A:216 72.0 0.465 E -96.9 134.5 72.0 0.465 0.0 HOH
 3.606
 CG1
 O
VAL B:234 B:216 79.0 0.51 E -96.4 137.6 NA NA NA
5xwr 1 Q09028 89.1 0.0 X-RAY
 2018-07-11 VAL A:234 A:216 76.0 0.49 E -100.0 128.1 69.0 0.445 0.045 B:Q09028:0.045
 HOH
 4.140
 O
 O
VAL B:234 B:216 45.0 0.29 E -114.1 126.1 45.0 0.29 0.0 HOH
 8.223
 CG1
 O
3c99 1 Q24572 86.51 0.0 X-RAY
 2008-05-13 VAL A:222 A:220 11.0 0.071 E -106.6 125.0 11.0 0.071 0.0
3c9c 1 Q24572 86.51 0.0 X-RAY
 2008-05-13 VAL A:222 A:220 7.0 0.045 E -107.6 138.1 7.0 0.045 0.0
2xyi 1 Q24572 86.51 0.0 X-RAY
 2011-05-04 VAL A:220 A:220 4.0 0.026 E -90.9 135.3 4.0 0.026 0.0 HOH
 3.268
 O
 O
2yb8 2 Q24572 87.44 0.0 X-RAY
 2011-05-18 VAL B:224 B:220 11.0 0.071 E -106.7 136.9 11.0 0.071 0.0 HOH
 4.095
 O
 O
2yba 1 Q24572 87.44 0.0 X-RAY
 2011-05-11 VAL A:224 A:220 6.0 0.039 E -88.3 119.7 6.0 0.039 0.0
VAL B:224 B:220 1.0 0.006 E -98.0 132.5 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16576-f1 1 Q16576 99.29 0.0 ILE A:215 A:215 57.0 0.326 E -95.6 132.3
af-q09028-f1 1 Q09028 89.1 0.0 VAL A:216 A:216 16.0 0.103 E -89.4 135.5