Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 16881125 . T A CCDS14179.1:NM_002893.3:c.260aAt>aTt_NP_002884.1:p.87N>I Homo sapiens RB binding protein 7, chromatin remodeling factor (RBBP7), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
3cfs 1 Q16576 99.26 0.0 X-RAY
 2008-06-10 ASN A:90 B:87 34.0 0.212 -66.2 158.7 34.0 0.212 0.0 HOH
 2.860
 ND2
 O
3cfv 1 Q16576 99.26 0.0 X-RAY
 2008-06-10 ASN A:90 B:87 43.0 0.269 -63.8 140.4 43.0 0.269 0.0 HOH
 5.017
 ND2
 O
ASN C:90 A:87 78.0 0.487 -71.4 145.9 NA NA NA
7m3x 1 Q16576 99.75 0.0 X-RAY
 2021-05-05 ASN A:83 A:87 64.0 0.4 -75.6 166.3 64.0 0.4 0.0 HOH
 2.799
 OD1
 O
5wai 1 Q09028 89.1 0.0 X-RAY
 2018-03-14 ASN A:102 A:88 22.0 0.138 -84.5 -139.7 16.0 0.1 0.038 B:Q15022:0.037
ASN E:102 E:88 37.0 0.231 -78.5 177.1 NA NA NA
5wak 1 Q09028 89.1 0.0 X-RAY
 2018-03-14 ASN A:102 A:88 15.0 0.094 -87.3 159.8 15.0 0.094 0.0
6nq3 1 Q09028 89.1 0.0 X-RAY
 2020-01-29 ASN A:102 A:88 29.0 0.181 -69.2 141.6 29.0 0.181 0.0
ASN E:102 E:88 38.0 0.237 -90.9 120.6 NA NA NA
2xu7 1 Q09028 89.1 0.0 X-RAY
 2010-11-03 ASN A:88 A:88 107.0 NA -113.6 360.0 107.0 NA NA
ASN B:88 B:88 136.0 0.85 -62.9 360.0 NA NA NA
3gfc 1 Q09028 89.1 0.0 X-RAY
 2009-04-14 ASN A:88 A:88 153.0 0.956 -81.2 360.0 153.0 0.956 0.0 HOH
 4.549
 O
 O
4pby 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 ASN A:88 A:88 120.0 0.75 -92.2 360.0 120.0 0.75 0.0 HOH
 8.211
 C
 O
ASN B:88 B:88 22.0 0.138 -75.5 154.6 NA NA NA
4pbz 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 ASN A:88 A:88 62.0 0.388 -112.3 166.0 62.0 0.388 0.0 HOH
 3.774
 CA
 O
4pc0 1 Q09028 89.1 0.0 X-RAY
 2014-06-11 ASN A:88 A:88 45.0 0.281 -63.6 163.6 45.0 0.281 0.0 GOL
HOH
 3.704
3.087
 O
ND2
 O3
O
ASN B:88 B:88 46.0 0.287 -67.3 164.0 NA NA NA
4r7a 2 Q09028 89.1 0.0 X-RAY
 2015-01-14 ASN B:88 B:88 117.0 0.731 -80.4 360.0 117.0 0.731 0.0 HOH
 7.370
 C
 O
5fxy 1 Q09028 89.1 0.0 X-RAY
 2016-05-18 ASN A:88 A:88 55.0 0.344 -99.3 175.6 49.0 0.306 0.038 B:Q13330:0.037
ASN C:88 C:88 66.0 0.412 -94.1 171.0 NA NA NA
ASN E:88 E:88 57.0 0.356 -93.1 179.4 NA NA NA
ASN G:88 G:88 59.0 0.369 -92.6 170.2 NA NA NA
6c23 5 Q09028 89.1 0.0 EM
 2018-01-24 ASN F:88 N:88 30.0 0.188 -118.7 128.5 28.0 0.175 0.013 A:Q15022:0.013
6c24 6 Q09028 89.1 0.0 EM
 2018-01-24 ASN G:88 N:88 43.0 0.269 -125.6 131.5 41.0 0.256 0.013 A:Q15022:0.013
6g16 1 Q09028 89.1 0.0 X-RAY
 2018-06-13 ASN A:88 A:88 52.0 0.325 -80.9 156.5 44.0 0.275 0.05 B:Q13330:0.05
ASN C:88 C:88 76.0 0.475 -79.6 159.8 NA NA NA
ASN E:88 E:88 76.0 0.475 -84.3 169.6 NA NA NA
ASN G:88 G:88 80.0 0.5 -77.2 89.5 NA NA NA
6wkr 4 Q09028 89.1 0.0 EM
 2021-02-03 ASN D:88 N:88 68.0 0.425 -119.0 84.0 68.0 0.425 0.0
6zrd 1 Q09028 89.1 0.0 X-RAY
 2020-12-02 ASN A:88 A:88 16.0 0.1 -77.6 166.9 16.0 0.1 0.0
ASN B:88 B:88 58.0 0.362 -83.8 168.4 NA NA NA
7aoa 4 Q09028 89.1 0.0 EM
 2020-11-11 ASN F:88 F:88 65.0 0.406 -100.7 79.2 65.0 0.406 0.0
ASN G:88 G:88 63.0 0.394 -100.9 79.3 63.0 0.394 0.0
7kso 4 Q09028 89.1 0.0 EM
 2021-02-03 ASN D:88 D:88 56.0 0.35 -89.6 -64.5 56.0 0.35 0.0
7ksr 2 Q09028 89.1 0.0 EM
 2021-02-03 ASN B:88 D:88 64.0 0.4 S -87.9 -61.9 64.0 0.4 0.0
7ktp 4 Q09028 89.1 0.0 EM
 2021-02-03 ASN D:88 D:88 57.0 0.356 -88.0 -63.9 57.0 0.356 0.0
6bw3 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 ASN A:90 C:88 131.0 0.819 -100.5 360.0 131.0 0.819 0.0 HOH
 9.139
 ND2
 O
ASN C:90 A:88 82.0 0.512 -102.2 -61.2 NA NA NA
6bw4 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 ASN A:90 C:88 138.0 0.863 -81.4 360.0 138.0 0.863 0.0 HOH
 7.960
 ND2
 O
ASN C:90 A:88 126.0 0.787 -78.5 360.0 NA NA NA
6zrc 1 Q09028 89.1 0.0 X-RAY
 2020-10-28 ASN A:90 A:88 90.0 0.562 -134.9 64.6 90.0 0.562 0.0
ASN D:90 B:88 125.0 0.781 -72.0 155.7 NA NA NA
5vtb 1 Q09028 89.1 0.0 X-RAY
 2017-12-27 ASN A:95 A:88 139.0 0.869 -80.0 360.0 139.0 0.869 0.0 HOH
 3.343
 O
 O
5xxq 1 Q09028 89.1 0.0 X-RAY
 2018-08-08 ASN A:119 A:88 113.0 0.706 -75.4 360.0 113.0 0.706 0.0 HOH
 4.747
 C
 O
ASN B:119 B:88 66.0 0.412 -85.4 -175.3 NA NA NA
5y1u 1 Q09028 89.1 0.0 X-RAY
 2018-04-18 ASN A:119 A:119 112.0 0.7 -76.3 360.0 112.0 0.7 0.0 HOH
 3.093
 O
 O
ASN B:119 B:119 77.0 0.481 -69.7 -39.5 NA NA NA
7m40 1 Q09028 89.1 0.0 X-RAY
 2021-05-12 ASN A:106 A:88 37.0 0.231 -74.9 164.3 37.0 0.231 0.0 HOH
 9.510
 N
 O
ASN B:106 B:88 127.0 0.794 -77.4 360.0 NA NA NA
5xwr 1 Q09028 89.1 0.0 X-RAY
 2018-07-11 ASN A:106 A:88 73.0 0.456 -99.8 -77.6 73.0 0.456 0.0 HOH
 4.332
 CA
 O
ASN B:106 B:88 54.0 0.338 -90.6 -178.5 54.0 0.338 0.0 HOH
 3.577
 ND2
 O
3c99 1 Q24572 86.51 0.0 X-RAY
 2008-05-13 SER A:94 A:92 30.0 0.261 -107.7 -167.2 30.0 0.261 0.0
3c9c 1 Q24572 86.51 0.0 X-RAY
 2008-05-13 SER A:94 A:92 30.0 0.261 -106.8 -170.4 30.0 0.261 0.0
2xyi 1 Q24572 86.51 0.0 X-RAY
 2011-05-04 SER A:92 NA:NA DO NA DO DO DO NA NA NA
2yb8 2 Q24572 87.44 0.0 X-RAY
 2011-05-18 SER B:96 B:92 90.0 0.783 -71.6 360.0 90.0 0.783 0.0 HOH
 3.855
 CA
 O
2yba 1 Q24572 87.44 0.0 X-RAY
 2011-05-11 SER A:96 A:92 82.0 0.713 -121.0 360.0 82.0 0.713 0.0 HOH
 7.852
 N
 O
SER B:96 B:92 95.0 0.826 -120.5 360.0 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-q16576-f1 1 Q16576 99.29 0.0 ASN A:87 A:87 27.0 0.169 -76.4 154.8
af-q09028-f1 1 Q09028 89.1 0.0 ASN A:88 A:88 26.0 0.163 -79.2 160.7