Variant

Genome Chromosome Position VCF ID Ref Alt mRNA Change mRNA Info
GRCh37 chrX 23801796 . A C CCDS14207.1:NM_002970.2:c.88Atg>Ctg_NP_002961.1:p.30M>L Homo sapiens spermidine/spermine N1-acetyltransferase 1 (SAT1), transcript variant 1, mRNA.
pdb_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 
alphafold_id: 
label_asym_id: 
label_seq_id: 
label_comp_id: 
auth_asym_id: 
auth_seq_id: 

PDB

Entity Residue Monomer BioUnit Ligand View
PDB Entity Uniprot Identity Evalue ExpMethod Date Name Label Auth ASA rASA SS φ ψ ASA rASA ΔASA Interaction Name Distance Atom(p) Atom(l)
2jev 1 P21673 100.0 6e-128 X-RAY
 2007-06-05 MET A:33 A:30 128.0 0.692 S -61.2 156.8 80.0 0.432 0.26 B:P21673:0.259
 NHQ
HOH
 4.397
6.536
 CB
CG
 N53
O
MET B:33 B:30 139.0 0.751 S -63.2 145.5 92.0 0.497 0.254 A:P21673:0.254
 NHQ
HOH
 3.872
2.566
 O
O
 N53
O
2b4d 1 P21673 100.0 8e-128 X-RAY
 2006-01-17 MSE A:30 A:30 91.0 0.492 -115.3 8.5 74.0 0.4 0.092 B:P21673:0.092
 HOH
 7.713
 CE
 O
2b4d 2 P21673 100.0 8e-128 X-RAY
 2006-01-17 MSE B:30 B:30 87.0 0.47 -123.4 10.5 12.0 0.065 0.405 A:P21673:0.405
 COA
HOH
 9.578
7.248
 CG
CG
 C2P
O
2b5g 1 P21673 100.0 8e-128 X-RAY
 2006-01-17 MSE A:30 NA:NA DO NA DO DO DO NA NA NA
2b5g 2 P21673 100.0 8e-128 X-RAY
 2006-01-17 MSE B:30 B:30 96.0 0.519 -136.3 21.9 29.0 0.157 0.362 A:P21673:0.362
 HOH
 3.471
 N
 O
2f5i 1 P21673 100.0 8e-128 X-RAY
 2005-12-06 MET A:30 A:30 141.0 0.762 S -66.4 -7.1 77.0 0.416 0.346 B:P21673:0.346
 HOH
 2.795
 CE
 O
MET B:30 B:30 107.0 0.578 S -70.0 153.0 61.0 0.33 0.248 A:P21673:0.249
 HOH
 3.328
 C
 O
2g3t 1 P21673 100.0 8e-128 X-RAY
 2006-03-07 MET A:30 A:30 133.0 0.719 S -76.2 57.0 76.0 0.411 0.308 A:P21673:0.308
 HOH
 3.898
 C
 O
MET B:30 B:30 120.0 0.649 S -70.2 77.4 NA NA NA
2b3u 1 P21673 99.42 2e-127 X-RAY
 2006-01-17 MSE A:30 NA:NA DO NA DO DO DO NA NA NA
MSE B:30 B:30 95.0 0.514 -147.5 39.9 28.0 0.151 0.363 A:P21673:0.362
 HOH
 3.549
 N
 O
2b3v 1 P21673 99.42 2e-127 X-RAY
 2006-01-17 MSE A:30 A:30 107.0 0.578 -138.2 29.3 86.0 0.465 0.113 A:P21673:0.114
 HOH
 6.988
 SE
 O
2b4b 1 P21673 99.42 2e-127 X-RAY
 2006-01-17 MSE A:30 A:30 78.0 0.422 -119.6 10.1 15.0 0.081 0.341 B:P21673:0.341
 B33
HOH
 4.008
3.293
 CE
CE
 C12
O
MSE B:30 B:30 56.0 0.303 -121.3 6.0 43.0 0.232 0.071 A:P21673:0.07
 HOH
 3.776
 N
 O
2b58 1 P21673 99.42 2e-127 X-RAY
 2006-01-24 MSE A:30 A:30 104.0 0.562 -146.8 33.0 87.0 0.47 0.092 A:P21673:0.092
 HOH
 7.144
 O
 O
2fxf 1 P21673 100.0 5e-127 X-RAY
 2006-02-14 MET A:29 A:30 88.0 0.476 -139.7 31.6 29.0 0.157 0.319 B:P21673:0.319
 CA
ACT
HOH
 8.410
6.923
3.379
 CE
CE
CG
 CA
OXT
O
MET B:29 NA:NA DO NA DO DO DO NA NA NA
3bj7 1 P48026 96.49 5e-124 X-RAY
 2008-09-16 MET A:30 A:30 88.0 0.476 -148.0 46.2 68.0 0.368 0.108 B:P48026:0.108
 HOH
 7.002
 O
 O
MET B:30 B:30 97.0 0.524 -149.2 38.4 58.0 0.314 0.21 A:P48026:0.211
 HOH
 3.724
 C
 O
MET C:30 C:30 86.0 0.465 -149.9 36.3 NA NA NA
MET D:30 D:30 97.0 0.524 -160.4 21.3 NA NA NA
3bj8 1 P48026 96.49 5e-124 X-RAY
 2008-09-16 MET A:30 A:30 75.0 0.405 -126.8 33.2 63.0 0.341 0.064 B:P48026:0.065
 HOH
 6.375
 O
 O
MET B:30 B:30 82.0 0.443 -140.0 35.8 63.0 0.341 0.102 A:P48026:0.103
 HOH
 6.618
 O
 O
MET C:30 C:30 92.0 0.497 -129.8 49.6 NA NA NA
MET D:30 D:30 88.0 0.476 174.4 51.7 NA NA NA

AlphaFold DB

Entity Residue Monomer View
ID Entity Uniprot Identity Evalue Name Label Auth ASA rASA SS φ ψ
af-p21673-f1 1 P21673 100.0 3e-128 MET A:30 A:30 102.0 0.551 -131.7 23.0